HsaEX6100568 @ hg19
Exon Skipping
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:8785]
Coordinates
chr5:149286875-149301272:-
Coord C1 exon
chr5:149301198-149301272
Coord A exon
chr5:149294506-149294570
Coord C2 exon
chr5:149286875-149286941
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTCTCTTTTGCCAGGAA
3' ss Score
9.83
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAATTTTTTGATGTGTGGCCGGTTCTGATGGGTGAAGTTCCACCTTACTCTGGTCCCAGGACTCCGGATGGAAGA
Seq A exon
GAAATTAACTTTTACAAGGTCATTGACTACATCCTGCATGGCAAAGAGGACATCAAAGTCATCCC
Seq C2 exon
GAATCCACCTCCTGACCATTGGGCTTTAGTAAGCGGTCTCCCAGCTTATGTTGCCCAGAATGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGATGTGTGGCCGGTTCT
R:
CTGGGCAACATAAGCTGGGAG
Band lengths:
128-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)