BtaEX6041230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63232704-63247594:-
Coord C1 exon
chr7:63247520-63247594
Coord A exon
chr7:63238650-63238714
Coord C2 exon
chr7:63232704-63232770
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCTTCTGCCTAGGAA
3' ss Score
10.5
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAATTTTTTGATGTGTGGCCAGTCCTGATGGGGGAGGCTCCACCCTACGCTGGTCCCAGGACTCCGGATGGAAGG
Seq A exon
GAAATCAACTTTTACAAGGTCATTGACTACATCCTGCATGGCAAAGAAGACATCAAAGTCATCCC
Seq C2 exon
GAATCCTCCTCCAGACCACTGGGCTTTAGTGAGCGGTCTCCCCACTTATGTTGCCCAAAATGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGTGTGGCCAGTCCTG
R:
TTGGGCAACATAAGTGGGGAG
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]