DreEX6057938 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24729947-24731444:-
Coord C1 exon
chr14:24731370-24731444
Coord A exon
chr14:24731163-24731227
Coord C2 exon
chr14:24729947-24730013
Length
65 bp
Sequences
Splice sites
3' ss Seq
CAATATTATTTCTTCTTCAGGAA
3' ss Score
8.49
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GAGTTCTTTGACCTTTGGCCCGTACTGATGGGAGAAGTACCTCCATATAGCGGACCAAAGACCCCTGATGGCAGA
Seq A exon
GAAGTGATATTCTACAAAGTGATTGATTACATATTGCATGGAAAGGAGGACATCAAAGTCATTCC
Seq C2 exon
TAACCCTCCTGCTGACCACTGGGCTTTAGTAAGTGGGCTTCCCACCTACGTTGCAGAGAATGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTTTGACCTTTGGCCCG
R:
GCCATTCTCTGCAACGTAGGT
Band lengths:
138-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]