RnoEX6041396 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2339204-2340941:-
Coord C1 exon
chr14:2340867-2340941
Coord A exon
chr14:2340322-2340386
Coord C2 exon
chr14:2339204-2339270
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGATGTGTTTTGTTTCCCAGGAA
3' ss Score
10.29
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GAATTCTTTGATGTGTGGCCTGTGCTGATGGGGGAAGCCCAGCCATACTCGGGCCCACGAACACCAGATGGCCGG
Seq A exon
GAAATTGTCTTCTACAAAGTCATTGATTATATCCTCCATGGCAAAGAAGACATCAAAGTCATTCC
Seq C2 exon
CACACCTCCAGCTGATCACTGGGCCCTGACCAGTGGCCTTCCCACCTATGTGGCAGAAAGTGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGATGTGTGGCCTGTGC
R:
GCCACTTTCTGCCACATAGGT
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]