GgaEX6050542 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53326059-53327748:-
Coord C1 exon
chrZ:53327674-53327748
Coord A exon
chrZ:53327521-53327585
Coord C2 exon
chrZ:53326059-53326125
Length
65 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCTTTCTATTTGTAGGAA
3' ss Score
10.48
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAATTTTTTGATCTCTGGCCAGTCCTGCTGGGAGAAGTTCCCCCTTACTCGGGACCTCGCACTCCGGATGGCAGA
Seq A exon
GAAATAGTCTTTTACAAAGTCATTGATTATATATTACATGGAAAAGAAGACATTAAAGTCATCCC
Seq C2 exon
AAATCCTACGCCGGATCACTGGGCACTAGTTACCGGACTGCCAACATACGTGGCTGAGAGTGGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATCTCTGGCCAGTCCTG
R:
AACCCACTCTCAGCCACGTAT
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]