BtaEX6032573 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108838574-108840397:+
Coord C1 exon
chr6:108838574-108838648
Coord A exon
chr6:108839498-108839562
Coord C2 exon
chr6:108840331-108840397
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTCTGCGGTCTGCTTCTCAGGAA
3' ss Score
8.87
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAATTCTTTGATGTGTGGCCCGTGCTGATGGGAGAGGCCCAGGCGTACTCGGGCCCCCGCACACCTGACGGCCGA
Seq A exon
GAAATCCTCTTCTACAAAGTCATAGACTACATCCTCCACGGCAAGGAAGACATCAAGGTCATCCC
Seq C2 exon
CTCACCCCCGGCTGACCACTGGGCCCTTGCCAGCGGCCTTCCAACCTACGTGGCAGAAAGCGGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.6=100)
A:
PF0159021=GAF=FE(11.9=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTGATGTGTGGCCCGTG
R:
AAAACCGCTTTCTGCCACGTA
Band lengths:
139-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]