MmuEX6001898 @ mm9
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61398063-61409666:+
Coord C1 exon
chr18:61398063-61398137
Coord A exon
chr18:61405195-61405259
Coord C2 exon
chr18:61409600-61409666
Length
65 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCCTCTTTTGCCAGGAA
3' ss Score
7.62
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAATTTTTTGATGTGTGGCCAGTTCTGATGGGCGAGGCTCCAGCTTACTCTGGTCCCAGGACTCCAGACGGAAGG
Seq A exon
GAAATTAACTTCTACAAGGTCATTGACTACATCCTGCACGGCAAAGAAGACATCAAAGTCATCCC
Seq C2 exon
GAACCCACCCGCTGACCACTGGGCTCTAGTGAGTGGTCTCCCCACTTACGTGGCTCAAAATGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGTGTGGCCAGTTCTGA
R:
CAGACCATTTTGAGCCACGTA
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: