RnoEX0064366 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56565094-56577410:+
Coord C1 exon
chr18:56565094-56565168
Coord A exon
chr18:56572849-56572913
Coord C2 exon
chr18:56577344-56577410
Length
65 bp
Sequences
Splice sites
3' ss Seq
CAATTTTCCTCTTTTGCCAGGAA
3' ss Score
7.52
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAATTTTTTGATGTGTGGCCAGTTCTGATGGGCGAGGCCCCAGCCTACTCTGGTCCCAGGACTCCAGATGGAAGG
Seq A exon
GAAATTAACTTTTACAAGGTCATTGACTACATCCTGCATGGCAAAGAAGACATCAAAGTAATCCC
Seq C2 exon
GAACCCACCTGCTGACCACTGGGCTCTAGTTAGCGGTCTTCCCACTTATGTGGCTCAAAATGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGTGTGGCCAGTTCTGA
R:
CAGACCATTTTGAGCCACATAAGTG
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]