GgaEX6040503 @ galGal3
Exon Skipping
Gene
ENSGALG00000006626 | PDE6C
Description
NA
Coordinates
chr6:21472378-21472782:-
Coord C1 exon
chr6:21472708-21472782
Coord A exon
chr6:21472557-21472621
Coord C2 exon
chr6:21472378-21472444
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTCTTTTTGTTTAGGAA
3' ss Score
10.37
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GAGTTCTATGATGAATGGCCAATTCGGCTGGGAGAGGCAGAGCCTTACAAAGGTCCCAAGACACCTGATGGACGA
Seq A exon
GAAGTCAACTTTTATAAGATTATTGACTACATCTTGCATGGGAAAGAAGAAATCAAAGTCATTCC
Seq C2 exon
GACACCTCCAGCAGATCACTGGTGTCTTATCAGTGGATTGCCAACATACGTTGCTGAAAACGGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006626-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGATGAATGGCCAATTCGG
R:
TCCGTTTTCAGCAACGTATGT
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]