HsaEX6089545 @ hg19
Exon Skipping
Gene
ENSG00000095464 | PDE6C
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:8787]
Coordinates
chr10:95385332-95386628:+
Coord C1 exon
chr10:95385332-95385406
Coord A exon
chr10:95386397-95386461
Coord C2 exon
chr10:95386562-95386628
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATATCCTCTTTCTTTCTTAGGAA
3' ss Score
11.51
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GAATTCTACGATGAATGGCCAATCAAGCTTGGAGAAGTAGAGCCTTATAAAGGTCCAAAGACACCTGATGGCAGG
Seq A exon
GAAGTCAACTTTTATAAAATCATTGATTACATTTTACATGGAAAAGAAGAGATCAAAGTGATTCC
Seq C2 exon
GACGCCTCCTGCAGACCACTGGACACTCATTAGTGGGTTGCCAACATATGTTGCTGAAAATGGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095464-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCTACGATGAATGGCCAATCA
R:
AACATATGTTGGCAACCCACT
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)