DreEX6067662 @ danRer10
Exon Skipping
Gene
ENSDARG00000100397 | pde6c
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
Coordinates
chr12:5102609-5105889:+
Coord C1 exon
chr12:5102609-5102683
Coord A exon
chr12:5102772-5102836
Coord C2 exon
chr12:5105823-5105889
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTAATCTAACAGGAG
3' ss Score
8.52
5' ss Seq
ACCGTAAGG
5' ss Score
6.08
Exon sequences
Seq C1 exon
GAGTTCTACGACGAGTGGCCGATTAAACTGGGAGACGTGGAGCCGTATAAAGGCCCGAAGACTCCTGATGGCAGG
Seq A exon
GAGATCATCTTCTACAAGATCATTGATTATCTGCTGGAAGGCAAAGAAGAGATCAAAGTTATACC
Seq C2 exon
GAACCCTCCTGCAGACCACTGGGCACTGGTTAGTGGACTGCCCAGCTATGTTGCTGAAAACGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100397-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGACGAGTGGCCGATTA
R:
AGCCGTTTTCAGCAACATAGC
Band lengths:
136-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]