RnoEX0064394 @ rn6
Exon Skipping
Gene
ENSRNOG00000016593 | Pde6c
Description
phosphodiesterase 6C [Source:RGD Symbol;Acc:1309844]
Coordinates
chr1:256842153-256843379:+
Coord C1 exon
chr1:256842153-256842227
Coord A exon
chr1:256843157-256843221
Coord C2 exon
chr1:256843313-256843379
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACAATCTTTTTCCTTCCTAGGAA
3' ss Score
11.23
5' ss Seq
TCCGTGCGT
5' ss Score
5.51
Exon sequences
Seq C1 exon
GAATTTTACGACGAGTGGCCAATCAAGCTTGGAGAAGTTGAACCTTATAAAGGACCAAAGACTCCAGATGGCAGG
Seq A exon
GAAATCATCTTTTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAGCGTGATTCC
Seq C2 exon
GTCACCTCCAGCAGATCACTGGACACTCGTTAGTGGATTGCCAACATACATTGCTGAAAATGGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016593-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACGACGAGTGGCCAATCA
R:
TCCATTTTCAGCAATGTATGTTGGC
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]