MmuEX6032635 @ mm9
Exon Skipping
Gene
ENSMUSG00000024992 | Pde6c
Description
phosphodiesterase 6C, cGMP specific, cone, alpha prime [Source:MGI Symbol;Acc:MGI:105956]
Coordinates
chr19:38225078-38226253:+
Coord C1 exon
chr19:38225078-38225152
Coord A exon
chr19:38226020-38226084
Coord C2 exon
chr19:38226187-38226253
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACAATCTCCTTTCTTCCTAGGAA
3' ss Score
10.4
5' ss Seq
TCCGTGCGT
5' ss Score
5.51
Exon sequences
Seq C1 exon
GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG
Seq A exon
GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC
Seq C2 exon
GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024992-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGAGTGGCCAATCAAGC
R:
AAATCCATTTTCTGCAACGTATGT
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: