BtaEX6099762 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000445 | PDE6C
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr26:14966610-14967875:+
Coord C1 exon
chr26:14966610-14966684
Coord A exon
chr26:14967639-14967703
Coord C2 exon
chr26:14967809-14967875
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTTTCCTCTTAGGAA
3' ss Score
12.56
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GAATTCTATGATGAGTGGCCAGTCAAGCTTGGAGAAGTCGAGCCTTACAAAGGTCCAAAGACACCAGATGGCAGA
Seq A exon
GAAGTCATCTTTTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAAAGTCATTCC
Seq C2 exon
GACACCTCCCATGGACCACTGGACTCTCATTAGTGGGTTGCCAACATATGTTGCTGAAAATGGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000445-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
PF0159021=GAF=FE(11.8=100)
C2:
PF0159021=GAF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCTATGATGAGTGGCCAGTCA
R:
AACATATGTTGGCAACCCACT
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]