HsaEX6101512 @ hg19

Exon Skipping

Gene

ENSG00000178338 | ZNF354B

Description

zinc finger protein 354B [Source:HGNC Symbol;Acc:17197]

Coordinates

chr5:178293245-178312029:+

Coord C1 exon

chr5:178293245-178293371

Coord A exon

chr5:178293977-178294072

Coord C2 exon

chr5:178309710-178312029

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTGTTGTTGTTTATGTGCAGGAC

3' ss Score

8.66

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

Exon sequences

Seq C1 exon

GTGTCACTGACATTCGAGGACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGCTGGCTCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG

Seq A exon

GACTCTCATTTACCAAACCAAAAGTCATCTCCCTGTTGCAGCAAGGAGAAGATCCCTGGGAGGTGGAGAAAGACAGTTCTGGTGTCTCCTCTCTAG

Seq C2 exon

GATGTAAGAGCACACCTAAAATGACAAAGTCAACTCAAACTCAGGATTCATTTCAGGAGCAGATAAGGAAAAGATTGAAAAGGGATGAACCCTGGAACTTCATATCAGAAAGATCCTGCATATATGAAGAGAAATTAAAGAAACAGCAGGACAAAAATGAAAATTTACAAATAATTTCAGTTGCCCATACAAAAATCCTTACTGTAGATAGAAGCCATAAAAATGTTGAATTTGGCCAAAACTTCTACCTGAAATCAGTCTTCATTAAGCAACAGAGATTTGCTAAAGAAAAAACTCCATCAAAATGTGAAATACAAAGAAATAGTTTCAAGCAGAATTCAAATTTACTTAACCAATCAAAAATCAAAACAGCAGAGAAACGCTATAAATGCAGTACATGTGAAAAAGCCTTCATTCACAATTCATCCCTTCGTAAACATCAGAAAAACCACACTGGAGAAAAATTATTTAAATGTAAAGAATGTTTAAAAGCTTTCAGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000178338-'5-7,'5-6,6-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.091 C2=0.100

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)

Main Inclusion Isoform:

ENSP00000327143