MmuEX6085209 @ mm10
Exon Skipping
Gene
ENSMUSG00000020335 | Zfp354b
Description
zinc finger protein 354B [Source:MGI Symbol;Acc:MGI:1351476]
Coordinates
chr11:50921823-50929503:-
Coord C1 exon
chr11:50929377-50929503
Coord A exon
chr11:50928564-50928659
Coord C2 exon
chr11:50921823-50923840
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTACTTTTGTTTGCGATTAGGAT
3' ss Score
7.82
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGTCGGTGACGTTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq A exon
GATTCCCATTTACCAAACCAAAGATGATCTCCGTGTTGCAACAAGGAGAAGAACCCTGGAAATCAGAGAAAGAAAGTCATGGATGCTCCCCTCTTG
Seq C2 exon
GATGTCACGGCAGTCTTCAAACCACAAAATCAACTCAAACTAAAGAGTCATTGTTTCAGGAATTAAAGAGGAAACAACTCAAAAGGGATGAGGCCTGGGACTTCACGTCAGGAAAATCCTGCAGACCTGACAACAGTTTTAGAACACAGGATACAAATGAAAGCTTAGAAATAATTTCAATCAACCATACAAAAATTCTTACTATAGATAAAAGCCGTAAGAATTTTAAATTTGGTCCAAGCGTTGGCCTGAAGTCAATTGGTAAGCAAAAGATTGCAGGAGAAAAAACACAAAGAAATAGCCTCGAGGAAAATTCAACTTTACTTAGTCAACCAAAACTCAAGACAGTAGAGAAACGCTATAAATGTAGTACTTGCGAAAAAGCCTTCATTCACAACTCATCCCTTCGCAAACATCTGAAAAACCATACTGGAGAGAGACTATTTCAGTGTAAAGACTGTTTGAAAGCTTTCAGCCAAAGTTCTGCCCTTATTCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020335-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=0.130
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGGTGATGCTGGAGAAC
R:
ACTGTTGTCAGGTCTGCAGGA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types