MmuEX6085209 @ mm9

Exon Skipping

Gene

ENSMUSG00000020335 | Zfp354b

Description

zinc finger protein 354B [Source:MGI Symbol;Acc:MGI:1351476]

Coordinates

chr11:50735325-50743005:-

Coord C1 exon

chr11:50742879-50743005

Coord A exon

chr11:50742066-50742161

Coord C2 exon

chr11:50735325-50737342

Length

96 bp

Sequences

Splice sites

3' ss Seq

CTACTTTTGTTTGCGATTAGGAT

3' ss Score

7.82

5' ss Seq

TTGGTAAGT

5' ss Score

10.47

Exon sequences

Seq C1 exon

GTGTCGGTGACGTTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG

Seq A exon

GATTCCCATTTACCAAACCAAAGATGATCTCCGTGTTGCAACAAGGAGAAGAACCCTGGAAATCAGAGAAAGAAAGTCATGGATGCTCCCCTCTTG

Seq C2 exon

GATGTCACGGCAGTCTTCAAACCACAAAATCAACTCAAACTAAAGAGTCATTGTTTCAGGAATTAAAGAGGAAACAACTCAAAAGGGATGAGGCCTGGGACTTCACGTCAGGAAAATCCTGCAGACCTGACAACAGTTTTAGAACACAGGATACAAATGAAAGCTTAGAAATAATTTCAATCAACCATACAAAAATTCTTACTATAGATAAAAGCCGTAAGAATTTTAAATTTGGTCCAAGCGTTGGCCTGAAGTCAATTGGTAAGCAAAAGATTGCAGGAGAAAAAACACAAAGAAATAGCCTCGAGGAAAATTCAACTTTACTTAGTCAACCAAAACTCAAGACAGTAGAGAAACGCTATAAATGTAGTACTTGCGAAAAAGCCTTCATTCACAACTCATCCCTTCGCAAACATCTGAAAAACCATACTGGAGAGAGACTATTTCAGTGTAAAGACTGTTTGAAAGCTTTCAGCCAAAGTTCTGCCCTTATTCAACAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000020335-'3-6,'3-4,4-6=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.455 C2=0.130

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)

Main Inclusion Isoform:

ENSMUSP00000104752