BtaEX0041268 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000017123 | ZNF354B

Description

zinc finger protein 354B [Source:HGNC Symbol;Acc:HGNC:17197]

Coordinates

chr7:3420182-3443864:+

Coord C1 exon

chr7:3420182-3420269

Coord A exon

chr7:3424220-3424315

Coord C2 exon

chr7:3442285-3443864

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTTTTTTTTGCTGTGAGCAGGAC

3' ss Score

7.2

5' ss Seq

TAGGTGAGT

5' ss Score

8.83

Exon sequences

Seq C1 exon

ATCTGACTTCTGGAGACTTCACCCATCCTCAAGGGAAACTGCTCATCAAAAGGATATGGCTGCCGAACAGAGGGAAGCAAGGTCTCAG

Seq A exon

GACTCCCATTTTCCAAACCTGAAGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCCTGGAAGGTAGAGAAAGAAAGCCCTGGAGATTCCTCTCTAG

Seq C2 exon

AATGTAAGAGCAGTCCTAAAACCACAAAGGCAACTCAAACTCAAGACTCATCATTTTCGGGGCTAATAAGGAAAACACTCAAAAAGGATGAACCGTGGAATTTCATATCAGAAAACCCCTGCATATATGAAGACAGAATAAAGAAACAGAAGGACAAAAGTGAAAGTTTACAAATAATTTCAGTTACCCATACAAAAATCCTCACTGTAGAAAGAAGCCATAAAAATAATGACTTCGGCCAAAATTTCAGCCTGAAATCAGTGTTTGTTAAACAACAGAGGATTGCTAGAGAAAAAACACCTTCAAAATATGAAATACAAAGAAATAGCTTAAGGCAGGATTCAAATGTACTTAACCAATCGAAAATAAAGACAGCAGAAAAACGCCATAAATGTAACATATGTGAAAAAGCCTTCATTCACAAGTCATCCCTTCGTAAACATCAGAAAAACCATACTGGAGAGAGATTATTTCAATGTGATGAATGTTTGAAAGCCTTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000017123_MULTIEX1-3/3=C1-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.545 A=0.455 C2=0.112

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF127602=Zn_Tnp_IS1595=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)

Main Inclusion Isoform:

ENSBTAP00000022760