HsaEX7004233 @ hg38
Exon Skipping
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]
Coordinates
chr7:81729605-81745120:-
Coord C1 exon
chr7:81745000-81745120
Coord A exon
chr7:81743353-81743471
Coord C2 exon
chr7:81729605-81729779
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGGTGTGGTTTGCAGATA
3' ss Score
9.66
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TTGAATGCATGACCTGCAATGGGGAGAGTTATCGAGGTCTCATGGATCATACAGAATCAGGCAAGATTTGTCAGCGCTGGGATCATCAGACACCACACCGGCACAAATTCTTGCCTGAAAG
Seq A exon
ATATCCCGACAAGGGCTTTGATGATAATTATTGCCGCAATCCCGATGGCCAGCCGAGGCCATGGTGCTATACTCTTGACCCTCACACCCGCTGGGAGTACTGTGCAATTAAAACATGCG
Seq C2 exon
CTGACAATACTATGAATGACACTGATGTTCCTTTGGAAACAACTGAATGCATCCAAGGTCAAGGAGAAGGCTACAGGGGCACTGTCAATACCATTTGGAATGGAATTCCATGTCAGCGTTGGGATTCTCAGTATCCTCACGAGCATGACATGACTCCTGAAAATTTCAAGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-'14-22,'14-19,15-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.010 C2=0.068
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(53.2=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACCTGCAATGGGGAGAG
R:
AGAATCCCAACGCTGACATGG
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains