GgaEX7000183 @ galGal4
Exon Skipping
Gene
ENSGALG00000008461 | HGF/SF
Description
hepatocyte growth factor precursor [Source:RefSeq peptide;Acc:NP_001025541]
Coordinates
chr1:10495127-10511137:+
Coord C1 exon
chr1:10495127-10495247
Coord A exon
chr1:10500393-10500511
Coord C2 exon
chr1:10510963-10511137
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTCGTGTTGTGGTTTGCAGATA
3' ss Score
10.56
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTGAATGCATGACCTGCAATGGAGAGAGTTACAGAGGACCAATGGATCATACTGAGTCAGGCAAGGAGTGTCAGCGCTGGGACCTTCAGAGACCACACAAACACAAATTTCGTCCAGAGAG
Seq A exon
ATATCCTGACAAGGGCTTTGATGATAATTACTGCCGCAATCCTGATGGCAAGCTGAGACCATGGTGCTACACTCTTGACCCTAACACCCCCTGGGAGTTCTGTGCGATTAAAACATGTG
Seq C2 exon
ATGTTGGCATTCTGAACAGCACAGAGGCAGTGGCTGAGACAACAACATGCATCCAGGGGCAGGGCGAGGGCTACCGTGGCACCGTCAACACCATATGGAGTGGGATTCAGTGCCAACGGTGGGACTCCCAATTTCCTCATCAGCACAACATCACTCCTGAGAACTTCAAGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461-'11-18,'11-15,12-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(53.2=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCAGGCAAGGAGTGTCA
R:
TGCACTTGAAGTTCTCAGGAGTG
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]