DreEX0037446 @ danRer10
Exon Skipping
Gene
ENSDARG00000045544 | hgfa
Description
hepatocyte growth factor a [Source:ZFIN;Acc:ZDB-GENE-041014-2]
Coordinates
chr4:19738301-19740344:-
Coord C1 exon
chr4:19740224-19740344
Coord A exon
chr4:19740021-19740139
Coord C2 exon
chr4:19738301-19738466
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTTGGATGTACAGGCA
3' ss Score
4.82
5' ss Seq
GTGGTCTGT
5' ss Score
1.09
Exon sequences
Seq C1 exon
TGGAGTGTATGAAATGTAATGGGGAAACCTACAGAGGGCCCATGGATCATACAGAGAGTGGGAAAGAGTGCCAGAGATGGGACTCGCAGAAACCTCATAAACACACCTACCAGCCTCACAG
Seq A exon
GCATGTAGGTAAAGGTCTGGATGACAACTTCTGCCGCAATCCCAATAATGATGTTCGTCCGTGGTGTTACACGATGGACAAAAACACCCCTTGGGAGTACTGTAACATCAGTGTGTGTG
Seq C2 exon
ACTCAGATAGCGATGTGGAAGTGGAGGTGACCAGCTCTTGTTTTCGGGGTCAAGGAGAGGGCTACAGGGGTACAGTCAACGTGACCCCTGCAGGTGTGACCTGTCAACGCTGGGACGCTCTCTCTCCTCACATCCATTCATACACTCCGCACAACTATAAATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045544-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(53.2=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGAGGGCCCATGGATCA
R:
TGTGCGGAGTGTATGAATGGA
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]