RnoEX6012412 @ rn6
Exon Skipping
Gene
ENSRNOG00000007027 | Hgf
Description
hepatocyte growth factor [Source:RGD Symbol;Acc:2794]
Coordinates
chr4:15462463-15483491:-
Coord C1 exon
chr4:15483371-15483491
Coord A exon
chr4:15481863-15481981
Coord C2 exon
chr4:15462463-15462637
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGGTGTGGTTTGCAGATA
3' ss Score
9.66
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TTGAATGCATGACCTGCAACGGTGAAAGCTACAGAGGTCCCATGGATCACACAGAATCAGGCAAGACATGTCAGCGCTGGGATCAGCAGACACCACACCGGCACAAATTCTTGCCGGAAAG
Seq A exon
ATATCCCGACAAGGGCTTTGATGATAATTATTGCCGCAATCCCGATGGCAAGCCGAGGCCATGGTGCTACACTCTTGACCCTGACACCCCTTGGGAGTATTGTGCAATTAAAATGTGCG
Seq C2 exon
CTCACAGTGCTGTGAATGAGACTGATGTTCCCATGGAAACAACTGAATGTATAAAAGGCCAAGGAGAAGGTTACAGGGGAACCACCAATACCATTTGGAATGGAATTCCGTGTCAGCGTTGGGATTCGCAGTACCCCCACAAGCATGACATCACTCCCGAGAACTTCAAATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007027-'6-10,'6-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(53.2=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCAACGGTGAAAGCTA
R:
CTTGTGGGGGTACTGCGAATC
Band lengths:
254-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]