MmuEX6015996 @ mm10
Exon Skipping
Gene
ENSMUSG00000028864 | Hgf
Description
hepatocyte growth factor [Source:MGI Symbol;Acc:MGI:96079]
Coordinates
chr5:16576909-16594018:+
Coord C1 exon
chr5:16576909-16577029
Coord A exon
chr5:16578443-16578561
Coord C2 exon
chr5:16593844-16594018
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGGTGTGGTTTGCAGATA
3' ss Score
9.66
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TTGAATGCATGACCTGCAATGGTGAAAGCTACAGAGGTCCCATGGATCACACAGAATCAGGCAAGACTTGTCAGCGCTGGGACCAGCAGACACCACACCGGCACAAGTTCTTGCCAGAAAG
Seq A exon
ATATCCCGACAAGGGCTTTGATGATAATTATTGCCGCAATCCTGATGGCAAGCCGAGGCCATGGTGCTACACTCTTGACCCTGACACCCCTTGGGAGTATTGTGCAATTAAAACGTGCG
Seq C2 exon
CTCACAGTGCTGTGAATGAGACTGATGTCCCTATGGAAACAACTGAATGCATTCAAGGCCAAGGAGAAGGTTACAGGGGAACCAGCAATACCATTTGGAATGGAATTCCCTGTCAGCGTTGGGATTCGCAGTACCCTCACAAGCATGATATCACTCCCGAGAACTTCAAATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028864-'12-28,'12-17,13-28=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(53.2=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGCAATGGTGAAAGCT
R:
TGAGGGTACTGCGAATCCCAA
Band lengths:
251-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types