HsaINT0000420 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69190358-69191315:-
Coord C1 exon
chr17:69191176-69191315
Coord A exon
chr17:69190478-69191175
Coord C2 exon
chr17:69190358-69190477
Length
698 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TATTACTATTGGCTTTTTAGATC
3' ss Score
8.11
Exon sequences
Seq C1 exon
TTTACACAGGAATGAAATGTGTGACACAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTGTATATAGTTTGCCTTTGGAAAAAACGAACAAATTTCCAG
Seq A exon
GTAACTTACTGTGTAATCACATAGAATATATGTAAGTGTTCACGATTGTGCTGACTGCATTTTCTGTTGTTCTATGAATCGAGTTCTAAAGCTTATACAAATGAAAATATTTATTCATAAGTAATCTGTTCCTATTTCCAATATGATGATCTATGTTACCAGGGACGTATTATAGCAACTAAAATTTCCATGAATATAGAAACCCCGATTTGCACTCTTTGTCAAAATTAAACTTTGAAATATCTCTTTTCTGAAATAGCAGTTTCTGTTAGAAATACAGATGAAATGAGACTTTATCTTTTAAAATATATGTAAGCAGTTCAATAGAGTCTTTGAAAATTATAATAATTTTATTATATATATAAAATGGTTAGTATAGAAAAGTTAGAAAATACAAAGGATAAGGTATAACTTAATAAATTTTTAGATAGACATACAGATACATGCTTATACAAACACACACAGCAATAATGATACAAGAATTTTAAAGTTTATGAAACAAAATGGAAATGTAAAATATTAAAACTGATTTGAATGACAAGAGAATATCTTACAGAAAAGGTTTCCTTGGATTATTGTGATTGCTTTAATATGAAAACATTTGTAGACATCTATTTTGAGTAATATTTAGAAATTAGTATTTTAATATACTCATTGATAATTTTAATTGCGTTGACTTATTACTATTGGCTTTTTAG
Seq C2 exon
ATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGAATGAAATGTGTGACAC
R:
TGGTTCATCAATTGCTGATTTTCCT
Band lengths:
255-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development