HsaINT0000697 @ hg19
Intron Retention
Gene
ENSG00000198691 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:34]
Coordinates
chr1:94467414-94471138:-
Coord C1 exon
chr1:94470997-94471138
Coord A exon
chr1:94467549-94470996
Coord C2 exon
chr1:94467414-94467548
Length
3448 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
CATTTCTTTCTCTTCCCTAGGTT
3' ss Score
12.46
Exon sequences
Seq C1 exon
TATTTTAACCAATATTTCTGAAGTCCATCAAAATATGGGCTACTGTCCTCAGTTTGATGCAATTGATGAGCTGCTCACAGGACGAGAACATCTTTACCTTTATGCCCGGCTTCGAGGTGTACCAGCAGAAGAAATCGAAAAG
Seq A exon
GTGAAAAATGTTTTGTTGTGGCCACATAGGAGTCTGGTTAATTACAAGCCTGTTTCATGAGAGTGCATTCTCTTGGAGATGAGAAACTGAAGCGTGCTATTCATTCATTCATTCCAACAAATGTTTACTATGTGTCTACTGTGTGCCAAGTACTGTTCTAGAAACCAGGAGTATAGCAGTGAACAAGACAGACAAAAAAAAATCCCCACTCTCATATCTAACAAAATGTTGTATGCATTTATCCTCTGACTCAGCAATCACACGTCTAAGAGTTTATCCTGAAGATGCATCTCCCACAGTGCAAAATGAATATGTATAAGGTGATCCATTGCATTTGTAATTGCAAAATGCTGGAAGTTACCTAAATGTTTAGTCATTGTAGATTGGCTGAATAATTTATGGTACAGACACACAATAAAGTCTTACGCAACTATAAAAAAGAAGAAGAAAAGTCTCAGTAAACTGATATGGAGATATTTCCAGTAAATACTGTTAAATGATAAAAAGCAAAGTGGAAAACAGAACATAGAGAACGCTACTTTGTATGTAAGAAAGAAGGAAAAACAAGAAAGTAAACGTATGTCTGCTTACCTTTGCAAATAGAACGTAGAAAGGATAAACCAGAAAACAATGAATTTGGTGATCAACAAGAAGAAAATGGGAAGAAAGAAAAATGGGAGGAAACAGTACTTCTGGGGATATATTTTTGTATAGTTTTAATTTTTGGAAGCATGTTAATGTTCCACATATTCAAAAAAAATCAGTAAGAATGGGAAGTAGGCAAAAATGAAAACAAAAAGAAAACCTAACACTGACAGCAAACTAAATAAAGTAACCCAATTTTATTTCAAATAAATATCATAATCTTGCAAAAGGGGGATAGAGCTAACACAAACAACTGCTGAACACAGTGTTTGACTCTATATCCTCATTCTTGGGCAGGGTGGAGCGGGGGAGAAGAACTACAAATAATTTCTGAGTTCTTTTTAGTTTGTTTTTTATAGTGGTATAGGCAAAGTGATTCTGAAAATTTTAGATGTGTTACAGGATTAAATAAATTAATAAATGTTTTGATGTTATTGGGACCCAGAATTCTCACCGTGGAAGAAGGGACTTACAAATATGGAAAAGGGAAAAGCAAGAAAGAACTGTGAGGTCATGGATAGGAACCGGAGGTAGCACTGGGAATTCAGGAATATTTATATGCTTGTGTTTGTGGGTGCATGCAGATGTGTTCATGTTTCATGCACATAGGCATGTATATATAGACATATATTTGCATGTGTGTATCTGTCTTCCGAAAGGCTCAAGAAGCAAAAACACCCCAGTAGCCATGAGCACACTTAGCACTCAGGCTTTTGTCTTAATAACATTCCCCACTAAAAGTAACCCTGATTCCTCCAATAAATGATAAGTTCCAGGGCTGGAATGGCATAGGTATAAAATGAACCTGGAATATCTTATGCCAGAAAGTAAGGAAGTGCTTTTAAAAAAAAAATAAGGGGCTGGGCATGGTGGCTCACACCTGTAATCGCAGCACTTTGGGAGGCCAAGGTAGGAAGATCGCTTGAGCCCAGGAGTTCCAGATTAGCCTGTGCAACATAGGGAGACCCTGTCTCTACAAAAAATTAGCAAACAAATTAGCTGGGCCTGGTGGTGCACGCCTATAGTCCCAGCTACTCAGGTGGCTGAGGTGGGAGGAATGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTGTGATCAAGCCACTGCTCTCCAGCCTGGGAAACAGAGCAAGACTCTGTCTCTTAAAATAATAATAATATAATTTTAAAGAAATAAAAGTAACTCTGTACAGATTGCTTATTGGTTACATGGGAGAAACATAATAATTTTACAATGGAGAAATTAGACAGCACCTTAACTGGGTGATCAAAATTAACCATAAGGGGCAGATGGACATCTCATGCCCCGAGATGTGATACCCTGTGAAGGACACAATTTCACTTATGTAGAATCCAGATTGGAGATATGTAACCTGAATCTTATCATGAGGAAACATCTGACAAGCTCCAAAGAAGGAATATTCCTTAAAAAAAAAAAAAGGAGACTGTATTCTTCAAAAACATAAGAGTCATAAAAGACAAAGAAAGAGCTATGGAAATATCTCTGATCGCAGGAGGCTAAACAGGCATAATGACTGAATAGCAGACAATAGACTACATCTTGTGCAGAAGAGAAAAAAAATGATAGAAGGATATTATTGGACCAACTGACAAAACTGAACTATGAACAGTAGATTAGGTAAATGTATCATAACATTAAGTTTACTGACATTGATAATGTACTGTGGTTATGTAAGAGAAGATCTCTATTCTTAGGAAATATGCCCTGAAGTATTTAGGAGTGAAGGGCTGTGATGAGTAATTTACCCTCAAATGGGTCACAAAAAATTGTGTGTGAGAGAGAGAAGGGTTTTATTAGTTAATAATTCTATGAACTATTTTTATTCCTATATGTTTGTGTGAGTTTGAAACTATTTCCAAATAAAAAGTTAAAAATGGAGATTACATTCTAGTGGGAGGGATAGACGATCTGTAGATAAATAGGTAAAATATCCAGTACATTAGAGAGTGAAAAGTCCTCAGGGAAAAGTAACGCAGGGAGGAACTGCTGGGGCAGGGTTTGCATTTTGAGGTAGGGTGGCCCAGGGAGAGCCTGCAGAGGAGAGAACCTGAATGAAGAACTAGAGGTGAGAGAAGGAGCCACGTGCACACCTAGGGAGGAACATTCCAGGCACGGGGGACTAGTATAGAAGGCAGAAGCATGGTGAGCTTGTCTCCAGTGGCTTCCCTAGATCCCCTCCTGCGCATGTGCACACACACCTGGTGTCTCTGTCATCGTTCCCTCACAGCACTGTCACGATCTGCCAGTATTCTGTTTATTTTGACTGCCACCTCCCCGCAGTCTGAGGATAGCAGCAATGGCTGTGTTCACATTGTTCTCCAGTGCCTGGTTCAGTGCCTGGCGTATGGTCAGTGCTCCATAGGTATGTGTCGGATGCACAAGGCTTTGGGTGTAACCCTCTTGACGGGTGGGATCAACAGGTCTGGGACTCACCATCTTCTCAAACAGAGCCTTCCTCCTCCACTGCTAGCCATGGTCCAGGACGCTGGGCGAGACCCACTGTCTTGCTCTTTGTAAGGCTGAAGTCCATTTCCCAGGCGGCTACACCCAACAGATGCTGAGCAGGCTGGGCCACCCTGGGATCCAAGACACAGAGAGAAAGAGCCCCTGTCTGGCGCCTGAAGCACATGCCAGAGGACAGGAGCCAGCAGGAGCCTGTTTCAGCCTAGCTGGGGATTTCATTCTGGAGGCGTGAGATCTGGGAGCCCAAGGCTTTGAACTGGGGGAGGTTTGGGGTGTTTGCTTGTCTTCTCCAAATGGCATTTCTTTCTCTTCCCTAG
Seq C2 exon
GTTGCAAACTGGAGTATTAAGAGCCTGGGCCTGACTGTCTACGCCGACTGCCTGGCTGGCACGTACAGTGGGGGCAACAAGCGGAAACTCTCCACAGCCATCGCACTCATTGGCTGCCCACCGCTGGTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198691-ABCA4:NM_000350:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)