HsaINT0000773 @ hg38
Intron Retention
Gene
ENSG00000154262 | ABCA6
Description
ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr17:69081066-69083013:-
Coord C1 exon
chr17:69082873-69083013
Coord A exon
chr17:69081146-69082872
Coord C2 exon
chr17:69081066-69081145
Length
1727 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CGACATCTTCCTGTTTTCAGGTA
3' ss Score
10.02
Exon sequences
Seq C1 exon
ATGCATTGGCTCCATCCAACACCTGAAAAACAAACTTGGCAAGGATTACATTCTAGAGCTAAAAGTGAAGGAAACGTCTCAAGTGACTTTGGTCCACACTGAGATTCTGAAGCTTTTCCCACAGGCTGCAGGGCAGGAAAG
Seq A exon
GTGAGACGGGCTTTTGATTATGGAGAAATATGGAGGGTTTATCCACTCAGTGGTTTCCTTTTTGCTGTGTGAGAACTTCATAGTGATTTGGCTTCATAATAAAAGTTAGGGACCTCAGAAAAGGATTTGTTCAGTATTCCAGATTATAAGAGATTGAGACCTACCCAGGAAGCTGTGTCCCCTGGGGCAGACCAGGCACACTCTCCTTGGCCATCCCAGGCTGATCCCCAGCTCCAGAGGGGTACTTGGAAAGACTTGGGAGAAGGAACTTCTAATGACTCAAACCCACACAGGACCACAATGGTGTCCTTCCTGGGCCTCCTCATAAACGCTTAACATATATAAATATTTAAAATTTAAAAGATGTAAATATTTAGGGTGAATTTTCCCCATAGGAAACAAATGGCAATTGAGATAATCAAAGAGTCTTTCTTTAATGGAATTTTCATACCTTAAAATAGAGAGTGGAAAGGGGTATGTGTGTATGTGTGTGTGCATGCCCACATATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATGTCTGTATGTTATTTGGGGGAGGGCAAGAAGGTGGAGCAGAAACTGAATTTGAAATTCCCGTGGAGAGATAAGTACATCAAAAAATAGGACATAAAAGCTACTATTTTATTTTAGCACAGTGTAAATGTAATTAAATTTTCTAAGATAGATATCAGAACATGTAACTTTGTCCCATTCCCAGACGTTTGGTGTCACAAATCAGAGAAGTGGTTCTGATATAGGTGGGAAGATCAAAAATGATAAAACAGAAAGAGCAGTGGCTGGTCTGAAAAGGGCCAATCTTGGACATCTGGTCAACCTTAGTGCCACCTGGGAGCACCAAACCCCTGTTTGGGAATAAGCTGGGAATAGGGCATGAGGGTTTACAGCCAGAAGTAGCACACGGAAGCAAGATGCCCCAAATCAATTACGTCTCTTCCTTAGAGGTCAGGAAGTATTTTGTTAAAGTGTTTTATGTCCTTCCTCTACTGCAATCTCCAACTCTCCCAACCTCATATTATTCTTTACAAGTTAGACTTCTGGGAGGAGGGGGAATCAAGGAGATTCCGAGGTTTTTTGGTTGGCAGCCCAAGCTCTATTGATTTCCTTACTTCTAGATTGCCCTAGGGCCTAGAAAAAGCCTTCAGAATAAATATGTCTTCCTTACAGATCTTTCGCCAATATCAACCTCCATCTCCAAGATTTGCCACTATTTATGGTTTTACAAAATAGTCCTGAATTTACTTTTGTTTAAGTGTTTATATTTTCCATTGTAAATGTAAAGCAAATTGCTGGAAATGTAAGAAATAAAGAAAAAATTCATTCATTAAAAAAAACAAAACAATGAATTAGCTTTCTGATGACAAAGATGAACATTTATTTTGGGGTTAATTCCCAACCTAATTCGAACTAATCAAAGGGAATAGTTCAGAATACCTGATTTTCAACACGCAAAGGTTTTGCATAAGCTGAGCACATATATAATTATGCTGAGTTATTACCAGGAGAGCTGTCTGCAACAGCCAGATACCAAAAAGCAATTCAAAACAATGCTGTGATTTCATATTTAAGCCATACATTAATTTGCATTACTTTTATTTTAAGAAGAAAATTGTTGGTAATATCAATATTTATTCTGATGCTCATTTTCTCCCCTTGAAACTCAGAGCTGAAAACGACATCTTCCTGTTTTCAG
Seq C2 exon
GTATTCCTCTTTGTTAACCTATAAGCTGCCCGTGGCAGACGTTTACCCTCTATCACAGACCTTTCACAAATTAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154262:ENST00000284425:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCCATCCAACACCTGAA
R:
TGCTTCTAATTTGTGAAAGGTCTGTG
Band lengths:
214-1941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development