BtaINT0011167 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62089880-62092129:+
Coord C1 exon
chr19:62089880-62090020
Coord A exon
chr19:62090021-62092049
Coord C2 exon
chr19:62092050-62092129
Length
2029 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
GACCGTGTCTCTGTCTCCAGGTA
3' ss Score
11.66
Exon sequences
Seq C1 exon
ATGCATCGGCTCCATCCAACACCTGAAAAACAGCCTCGGCAAGGATTACATTCTGGAACTGAAACTGAAGGAGGCTTCCCAGGGGATGTCGGTCCACACGGAGGTCCTGAGGCTGTTCCCTCGGGCGGCCCCGCAGGAAAG
Seq A exon
GTGAAGCCACTCTTGGTTGTGGAGGAGCAGGTTGGCTTTTTCCATCCGCAGTTCCTTCTCTGCTCTGCAAGCACTTCAGGGCGATTAGACTTCAGCATCAAGGGAGGGACCTCAGAAACAGATTTAAGTCTTCCCGATCATAGGAGATTTGTGAGAGTCCCCAGGAAGATGTGTCCCCCCAGGGAGGCCTGGGGATACCGGCCTGGGCCTCCGCGGCCACCCAAGGCTGGTCCCCAGGTCTGGAGCGGGACTTGGAAAAACCGGAGAGGAAGTTCTGATGACCTGAATCTGCACAGAAGCACAGCCAGCCTGGGACACCTTCCCCAGTCTTCCCTGTAAATATTTAAAAGACGTAAATATTTACCATTTTAAAGATGCAAGTGTTTAGAGTGAACCAGCCCCATCGGAAACAGCAATTGGGACCATCAAAGCGTGTGCCTTTAGTGGGGTTTTCCTGCCTCACAATGAAGAACGGAAGGGAGTATGTCTGTGAGCATAGAGGCAGAGGGGTGTGGTTTTTTAAGGGGAGGGCAGGGAGCTGGAGCAGGAGCTGAATTTGAAATTCCTTGTGGGGAGAAGCCATGGAAGAAGCAGGTGTAACACCCAGTACAAAGTAACAGAATTATCTAGCTGGGTGCAGGGACACGGACTCAGTCCCATTCCCAGACCCTCAAGCCACGGCTTTGATGTAGATGGAGAGGCAGGAGAGCCAAGCTGGGTGGAGACCAGGGTCTGAGCGGCTTCGGGGCAGCCGGGGGCTTCACAATCTGTCGAGAACGAGCCATGCGTGGGGCCTGAGGTCTCAGCAGAGGTGGGACAAGGGGACCGGGGCAGAAATCAGCCCCAGCACTTTGTCTCCTTCAAGCTGGGTCAACTGCAGGTTGGCACAAGCCATCGGGCTGCCTCCCTCTACAAGGATTGCTGCTGCAGCTGCGGACCTCCAACGCCCCTGAGAGCGTTCCGGGGGGAGGGCAGGCATGAGGCGTCTGTGCCCCTGGGAAACAGCTCCGGGCCTCAGATGGTTAGATGTTCTCAGGAGCCCATTTTACGAGCCCAACTCTTGCACCCCCCACATCTAGAAAAGCACCAACCTCCTTCATGGCGACGATGGCTCCTCATGGTCAGTAGCAACTGTCACGAGACCAGCAGAATCCTCGGCAAAGAAACACGTGCCCAATTACACATACCCCCCTCCACCAGAATCACCTCCATACTGGCCTTGCCCCGCGGCCTCTTGGGAGCAGTGTCTCAGCGATCTCAGGCGCTGTCTCTCAGGCTACAGTCCTCATTCTGCCCCAAATCAAACAACTCACAACTCTCACGTTGTGCTTTTTTTTTTTTTAAGTGTAAAGCCGTCTCAATCCCTCACTGTTATGACCCTCACTCTCAACCATGTCTCTTGCCTTCGCTTTCTGGTTACAGGGATGAAATGTTGGGATTAGTTCTAAATTATTCAAACTCATCAGAGGGATTCATTCAGAATGCCTATGTTCCATGAGAAATAGGTTTGAATAAACTAAACTGAGCGTTGTGTTGCTCAGTTGCTAAACGGTGTCTGACTCTTTGAAACCCCGTGGGCTGCAGCAAGCCAGACTCCCCTGTCCTTCAGTATTTCCTGGAGCTTGCTCAAATTCGTGTCCATCGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCGCCCTCTTGTCCTGCCCTCCGTCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGCTCTTTGCATCAGATGGCTGAAGTATTAGAGCATAAATGTGATTAGACTGGATCATTTCCAGGAGAATTATCTCCAACTGCCAGCCAACAAAGCCACTGCAAGAAATATCTATTGAAATTTATCTTATTGTTTCATATTGAAGCCAAATGTTAGTTTGTATTCATTTTATCTGTTAATAAATTTTTTAAAATAATAAAATATATTTACTAACTTTTAACATCAGCATTTATTTTGATGGTCTTTTTCCCCCTTGAAACTCAAGATGAAGTGTGACCGTGTCTCTGTCTCCAG
Seq C2 exon
GTACTCCTCGTCCTCGGCTTACAGGCTGCCTGTGCAGGACGTTCAGCCCCTCTCTCAGGCCTTTCACAAGTTAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development