RnoINT0010341 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98480464-98481834:-
Coord C1 exon
chr10:98481694-98481834
Coord A exon
chr10:98480544-98481693
Coord C2 exon
chr10:98480464-98480543
Length
1150 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TAGTGTGTTCCCATTCCCAGGTG
3' ss Score
8.4
Exon sequences
Seq C1 exon
ACTCATCGGTTCAATCCAACACCTCAAGAGGAGATTTGGCAAGGATTACATTCTAGAACTCAGAGTGAAGGAAATTTCTCAAGAGCCATTAGTTCACAAGGAGATTCTGAGGCTGTTCCCCCAGGCTGCACGCCAGGACAG
Seq A exon
GTAAAGAGAACTGTCACCGACAGAGAAACACACTATGGCTTCTGTCAGCACCGTGATGGAATGTCGCAGGGATAGTGAAGGACCCCAGAAAGGTTCAGTCTCCTGGGTTATAATAGACTTGGAAACTACCTAGGAACGTGTGTGTCCTCCTCCAGGAAACAGGGGTAAAGATGAGGTGAAGTCTTCCTTTAATATAATTTCCTTGCTTCAGAATGGAAACTATAAAGGAGTGCATGTGTTTGCACAAACATTTGTACTCACGCGTGTGTATGCATGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTAGGAACAGGACCCGAAGATTAAAGCAGCTACTGAATTTAAAGTCAGAGGTTGAGAACAACAGAACAGCAAGACACAAACCTGCTACTCGCATCTTCACACTGCATGGATGTAATGATTACCTAAGGTATATTCCGGAACCTGCTCTTACCCTAAAACCTTTTGTATCACCAGGTAAAGAAATAGGCTTGGATGACTGTGGGAATATGATGGATAATAAGAAAGGAAGAGGGTGGTCTGGCCTGAAGACAGCCAGTCGGGACGTCTGCCCCGTCTCCTTGTCACTTAGGAACACTGCACTGTTAATCTGGAGCAAAGGTTACAGTCGGAGGCACACAAGAAAGGAAGCCTAATCCCTAGACCTAAATCTGCCTGTTCTCAGACGCCAGGGCTTTTAAGTCTTTCCACAGCTGTCCTGCCCCAGTCCCCAGCCTGAGACCATCTTAGGAGATAACTTTTTGGACACAATACCTACCTTTCCTTTGAAGTGACTTTCCAGCCTGGTTTGGACTAGTCTCAGGGTGTAGCTTTCAGTTTCTGGGTTTTGTTTGTTTGTTTGTTTTTTTAACAAGTTATCGGATTGGTTTGAGTCAACTGTGGTATGTGAGAATACAAGTAGTAACAATGTGTCATTTCTAGAAAGGACTGCAACAGCTAGTTCCCTTCAATCATTTCCAAAGCCTCTATTGGTAAACAATTCCATGCTTAACCTGTACATTATTTTGTACCTGTTTCATTTTTAAAACAAAATGGCCGACAACAGGCTCATTTTGATATCCGTCCTCCCTCCGTTGAAGTGAACGCTTGAATCTAGTGTGTTCCCATTCCCAG
Seq C2 exon
GTGCTTCTCCTTGCTCACCTACAAGCTTCCCGTGACAGATGTTCATCCTCTGTCTCAGGCCTTTCACAAACTGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTTCAATCCAACACCTCA
R:
GCTTCCAGTTTGTGAAAGGCC
Band lengths:
214-1364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]