HsaINT0000832 @ hg19
Intron Retention
Gene
ENSG00000141338 | ABCA8
Description
ATP-binding cassette, sub-family A (ABC1), member 8 [Source:HGNC Symbol;Acc:38]
Coordinates
chr17:66914188-66915617:-
Coord C1 exon
chr17:66915442-66915617
Coord A exon
chr17:66914327-66915441
Coord C2 exon
chr17:66914188-66914326
Length
1115 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
TATACTTTCCTCGTTTATAGATT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTTCAGTCACCATCTATAACAATAAGCTTTCAGAAATGGCTGACCTAGAAAATCTCAGCAAGCTGACCGGAGTTTGTCCACAATCCAATGTGCAATTTGACTTCCTCACTGTAAGAGAAAACCTCAGACTCTTTGCTAAAATAAAAGGGATTCTGCCACAAGAAGTGGATAAAGAG
Seq A exon
GTACAAAAATATGTTAAAGTTAATGTGTTGGTCAAAATGAGATTATTAAAACCATTTGCACTGAGTTTTAATTTTAAATTATTTGTGCGCAAATCATTGTACAATTGTTGGACAAGAAAATCCAATTTAAACAATAGCTAACATTGCATATAATTTACAATGCGCCAAGCATATCCTTAACTTTAAATCTAATAAATCATTTATTCCTCATAGCAACCCTATGAGATAGGTGCTATTATTATCCCTATTTTATACATGTGGTTCAAGAGAGCAAGGAACTTGACCAACTTAGTAGTCAATGTGTGTGACATTCAAACCCGGAAAGTTTGGCTCCAGTGTTTGTTCTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTTGCTCTTGTCGCCCAGGCCGGAGTGCAATGGCCCTATGCCGGCTCACTGTAACATTTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCCGCCAGGCTTGGCTAATTTTTGTATTTTTAGTAGAAACAAGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTCACCTCGTTATCTGCCCGCCTCAGCCTCCCAAAGTGCTGAGACTATGGGTATGAGCCACCGCGCCTGACCCAGTGTTTGTGCTTTTAACCATTTACACTTTACAGCCTTGTATTTATAAATTTTTAAAAAAGGAATAAATTTTGGTGTATGACATAAATACTGTCTTTTGGTTAGATACAAAGGGTTCTGCTGGAATTGGAAATGAAAAATATTCAGGATGTTCTTGCTCAAAACTTAAGTGGTGGACAGAAAAGAAAGCTAACCTTTGGGATTGCCATTTTAGGAGATCCTCAGGTGAGTCACATTGAATTTGCAGGTGAATTCAAAGTTTAAAAAATGGAACTTTTGGTAATAGTTCAAATATTTTATTCGCAAAGGACATGTGTTATAAAATATTCATAATAGAACATTAAATAGAGTATCTAAATCCTAACCGTAATACTCTGTTAAATATAATCAATATGGTTTTTGCGTTGTTTTCTGGAAGAACTTCACCTTTGAGGAAAACCGCCTTATATACTTTCCTCGTTTATAG
Seq C2 exon
ATTTTCCTGTTGGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCAAGTATGGAACCTTCTGAAAGAACGCAAAACAGACCGCGTGATCCTCTTCAGTACCCAGTTCATGGATGAGGCCGACATCCTGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141338-ABCA8:NM_007168:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(37.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(29.5=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCACCATCTATAACAATAAGCT
R:
CCAGGATGTCGGCCTCATC
Band lengths:
310-1425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)