HsaINT0001807 @ hg19
Intron Retention
Gene
ENSG00000143322 | ABL2
Description
v-abl Abelson murine leukemia viral oncogene homolog 2 [Source:HGNC Symbol;Acc:77]
Coordinates
chr1:179100446-179102509:-
Coord C1 exon
chr1:179102447-179102509
Coord A exon
chr1:179100617-179102446
Coord C2 exon
chr1:179100446-179100616
Length
1830 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCCTTCTTATGTCTTTCAGAAG
3' ss Score
9.61
Exon sequences
Seq C1 exon
ATCACTTTGCCAGCTGTGTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG
Seq A exon
GTGAGAGATGTTGAGATGTTGCAGATTTGAACTAAGGCATTGGCAGTAGAGATGGAGAACAGGGAATGGATTTGAAAATAAATGGAACCACAAATTCAAGGGTTTTTCCTTTCATATATGATAAAACTATTTTTATATTAAAAATAAGTTGGCCTGGCTGGGTGTGGTGGCTCACGTTTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACTTCGTCTCTACTGAAAATACAAAATTTAGCTGGGCTTGGTGGCGTGCACCTGTAATCCCACCTACTCGGGAGGCTGAGGCAGTAGAATTGCTTGAACCTAGGACGTGAAGGTTGCAGTGAGCAGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAAAACAAGACTCCATCTCGGTGGTGGGAGAGGGGTGCGGACGGGGAATAAGTCAGCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAACCTGGCCAACATGGTAAAATCCTGTCTCTACTAAAAATACAGAAAAATTAGCTGGGTATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACGCTTGAACTCGGGAGGCAGAGGTTTCAGTAAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAATAATAATGATAATAATAATAATAATCATAATAATCATAAGTGGAGGAAGAGAGACATAAAAGTGTTGTTATATGACATAGACATTTGGATAGTTTGCCTTTGTAGACAGGCACTAAAAATAGTCTGATCAAGAAAATTGATACTGGAAAAACTGTTTTTTGTATAATCGATCTGGGCTGTGAGAAGCAGGTGATCTTTAAGATGGTATAGGGATCACCTGTGCTATGTACTATGAATAAATTTAGAAACTGTAAAGGCTTAAGGAAAAAACAGGTCGTAAAAGGCTTGGACCACTTTGAGTAGAAACTCAATAAATGCCCGATGATAGTAATGTTTTCTAGGCTCTTCAATTAAGTTATTGATATTTACAAAAAATCACTGCTCAGGAAAACAAAATAGAGTTTAAAAGTCATTCAGGCCGGGTGCGGCCACATTTCTTTTGTTTTTTTAAAACGAAAAAAAGATTATTTTTTGCCATGTTGGCCAAAAAAAGATATTTTTCTAAAAGCACTTTTTAAATAATTTTTTCTATACTTAAATAGAGGGCCTGGATTTATACAGTATTACCTAATTCTGAAAAATAATCCCTGTTGTCTTTTCTACAGTTTGTTTTCTGTGGAGAGAGAAAGGAATAAGGGTAGTTTGAGTGGACTTGTAAGAAACTTACAATCATTTCTTCCTTAAAACTACAACCACTACTACAACAAAATATCCTCTATGTTTTATAAAGCTAGTAACCATTTCTCTTTGAGATTCTTTTTTCCATTTTGAGAAAACTGCGTTTCCTATTAGTTTATGTCTGATTTTGGTGAGTGCATATAAATCACGGCTAAACTCTCATTTTGTGGTCTTTTCTCTGACTACCTTGTTTTACATTTTCAACAAGTAAATTGCTTCCTCATGCTTAGGAGACACAGTGCCTATTTGCTAATTCTTCATAACACTTTATACTGTACAGTTCTTTCCTACTCTGGAGCCAGCAGCTGAAATACTGTGTATATAATGAATTCAAACAAATGTTTCGCTGTTGAACTCACCGTGAATTCCCTTCCCTTCTTATGTCTTTCAG
Seq C2 exon
AAGCTTTGCATCGTCCCTATGGTTGTGATGTTGAACCCCAGGCACTAAATGAGGCTATCAGGTGGAGCTCCAAGGAGAACTTGCTCGGAGCCACTGAGAGTGACCCTAATCTCTTCGTTGCACTTTATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143322-ABL2:NM_001168237:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=NA C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(38.3=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTTTGCCAGCTGTGTGG
R:
AGTGATGCTGAGTGTGTTATCACC
Band lengths:
230-2060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)