BtaINT0012125 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015026 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr16:61915805-61917269:-
Coord C1 exon
chr16:61917207-61917269
Coord A exon
chr16:61915976-61917206
Coord C2 exon
chr16:61915805-61915975
Length
1231 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTCTCTCTATGTCTTTCAGAAG
3' ss Score
9.85
Exon sequences
Seq C1 exon
ATCACTTTGCCAGCTGTTTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG
Seq A exon
GTGAGAGATGTTGGGAATCTGAACTAAGACATTGGCAGTACAGGTGGAGAGGAGGGATTGGATTGGAAAATAAAACCACGGATTCAAGGGGTTTTCTTCTTCATATATGATAAAACCAAGTTTAAATTAAAAATGAGTGGAAGAGAGGGAGACATACTAGAAAAGAATTGTTATATGACAGAGGCAGTTGCATAGTGGCAGAGTGCCACTAAAACCCATTTTTAGTGACTAAGAAAATTGCTACTGAAAGAACAGTGTGTTTTTGGTAGGATTATTCTGAACTGTGAGAAGCAGGTGATCTTAAACTAACATGGTGTAAGGATCACCTATTTGTTTAGTGTAACTAAATTTAGGAACCACAAAGCCTTGAAGAAGAAACCAGGTCTTACAAGGCTTCAACCATTACAGGTGATAGAAACTCAATAAATCATGTCCGTTGCCAGCTGTATTTTGAGTCCTAATTAAGTTACAGTATTTTATTAAAAATGTATGAAAAGAAAATAAGGAAAAATTGTTTTTTATTAAAACAATTAACAGTGGAAAGCTGTTATGTTATAGACTGTACATGGTAGTACAAAGGTATTTTGGGATGCCAAGAATATTTTGTATTAAACCAAAATACTTTTCTGTTTAGTAGATAATTTTAGGGTTTTTTTTTCTAAAAGCACTATTTCTATAATTTTCTATATGTAAATGGAGGGCCTGGATTAATACAATCTATACATATTTCTTAAAAATCTCTGTTATCTTTTCTGAAATTTGTTTTATATGGAGATAGTAAGGGGAGAAAGGTACTTTGGGGGGACTTAACTTCATTTATAAAACATACCTATTCCTTCTTAAAACCACCATCATCTAGACAAAATATCTTGTGTGTTTTATAAAATGAACTGGCATTTCTTTTTGAGATTTTTTTTTCTTTCATTTTGAGGAAACTATGTTTCCTATTCATTTACCTCTGATTTTGGTTCATGCATAAGCATCACAGCTAAATGCTCATTTTGTGTTCTTTGCTCTATCTTACTATGTTTTCAACAAGTAGATTTCTCTCCTGCTTAGGAGACATGCCATCTGCTCATTCTTCATGACTCCACAACCACGTGTATGGTTTTGTTCCTTGCTGGAGCCATCAGTATAATGCCAACAGCTAAAATACTGTCTGTGTAGTGAATTCAAATGAATCTCCAGCTGTTGGACTTGGTGTAAACTCCTTTCTCTCTATGTCTTTCAG
Seq C2 exon
AAGCCTTGCATCGCCCCTACGGTTGTGATGTTGAACCCCAGGCCCTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTTGGAGCCACCGAGAGTGACCCTAATCTCTTTGTTGCACTTTATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015026:ENSBTAT00000020006:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(38.3=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTTTGCCAGCTGTTTGGA
R:
AGTGATGCTGAGTGTGTTATCACC
Band lengths:
230-1461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development