GgaINT0038963 @ galGal3
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
NA
Coordinates
chr8:6531617-6532493:+
Coord C1 exon
chr8:6531617-6531632
Coord A exon
chr8:6531633-6532322
Coord C2 exon
chr8:6532323-6532493
Length
690 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
CTCTTCTCCTCTTCCTTCAGAGG
3' ss Score
10.56
Exon sequences
Seq C1 exon
AGTGGCTCTTGCTCAC
Seq A exon
GTATGTCAGTCCCGTGAGAGTGTGTGGGCATTGGGAACACGTGGTGGGGCAGGAACGGCCTTCAGTTGTGCCTTCGAAAGCATTACTTACACCCTTACACTTGCACATATTTTTGCCCCACGTGTAAGTTAAGTGCCCTGTCTTTCTTGTGTCTTCACACTGAAGTGCAGCCGGCTGCTTGTTCCCGGGGAGACCTCAGTATGGATTAGAAAACCATTTTTCTATGAAAACCATTTCAAGACCGATCGTTCCTCCCACTTCCCTGTACTAACAAGTGTGCGTCATTTGAAGCAGTAGAACAGAATTGCCCTGCGTTCAGGAGCACTGCTGCTAAATACACCTCGTGTTACCCTTATTACTTTCTATCCCTGCCAGTTTACCACTTCTTTATTTGCGTAGCCTGAAATGTGTCACAAATGGCTGCCATTCCTACTCACACTGACTCGGTTACTGTTGCATATTAGTTGTCATAATTCGATCTGTTTTACCTCTATTCCTAACATTGCTTTCAAATGCAAGCTACTTACTTCAGGCACGGAAACAAAGATTGAAAACATAACGTTGCAGACTTTAAAAGCTTTCCTTCACTTCTTCACAGCAGAAGAGCCTTTTTATTGGGAGCTCTGCTCTGCTGTGCGCCGGGCTTTGATTTACTTCCAGCTGTAATTTCCTCTTCTCCTCTTCCTTCAG
Seq C2 exon
AGGCCCTGCACCGCCCCTATGGTTGCGATGTCGAACCCCAGGCACTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTGGGAGCCACCGAGAGCGATCCCAACCTCTTTGTTGCACTTTATGATTTTGTAGCAAGCGGTGACAACACGCTCAGTATCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(38.3=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]