GgaINT0038963 @ galGal4
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr8:6201090-6209305:+
Coord C1 exon
chr8:6201090-6201410
Coord A exon
chr8:6201411-6209134
Coord C2 exon
chr8:6209135-6209305
Length
7724 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTCTTCTCCTCTTCCTTCAGAGG
3' ss Score
10.56
Exon sequences
Seq C1 exon
TCAGTATTTTAGAAAGGAAAACTCTTCTTTGTTCAAGGGAAGAAAATGGCTGTGGACAATTGCTTGAGCAGCATCTCAGTGGCTGACAATTGAGGCTGACAGCTCTGTGGTTTATTTTTAGCTCGAGAACTTTGTTTAAACCAGAAGCACTGTGTAGCTTTGGCAGTTGCTGCATATTCACTGTGGGTGGATGGAACTGAGCAATCGCATCTGTGCTAACAGGCATTCCGGGATTGTATTAAAGAATTAAACTCATGTACTGGAAACTGAAGCTCTATCAGCTCACCTGGGGAGCTCCACCCTCCGAACATCTTCCGGAAG
Seq A exon
GTAAGCAGTGCCAGCTGCCCAAGGTGCTTGCCAAAATAGCCACTTGGGCTCAGGTCCTGACATCGGCCCAGATGGATGCTGTGAGATTGATGTTTCTTTGACTCCTGAGATTGCAGGTCAGTAAGTGAGACTCTGCCCTCTCCTTCCAAGTTTTCCCTGTGGCTGGAAAGGCTAAAAATAAAGCTCAGAAAGCTGGCTGAGAAGTAGATCAGCACGGTCGTTGTTCCAGGTGCTGAGACTAAGGAGAGATCCTAATAATGTAGTACTTCTTATTGGAAGTCATTATGTCACTTGGAAAGTTGCTTGGACATTTATGTCATGTTAACTCCAAGGGCTGATCAGTTGCTGCTTTGCATCTACGAAATGAACCTCTCATCAGCCAGGCTACGTCAGTGTAGGTATTTCTGGCTTGCTTAGGGTTTTTCAAGTAGTCTTTTTGTAGAAGAACTCTTACTTCAAGTGCTTGTCTTAACACCGGGTGAGTAAATAGCAATCCATTTGATCTGCATAGAAGTGGATAATATTTCAGCTTTGATCTGGCCAGAATTTATGACTCCTCGGGAATTCCATGGAAACGTAATTCACATTAAGCTGTTTCTCCCCCAAAGTACTGCTTGAATAAGCCTAGATGACTTGCTGTAAGCTGTCATAACGTTTGGCCAGCCCACCTTTCCTGTAGGGCTGGGTGACCTAATCCTTACTCTTTATGCTGGAGTGTTTTACTGGAACTCACCACAACTGAGGAAGAATGTTAAACAGTCTTTTGATCTCCATGTGTGTGGTTTCCCAGTTATCTTTGCTGGTGTCCCTTCATAGCATTCCTTTTCCTAAAACTGCCCATGTGGGAGTAAGTCGTAGTCTACTGTAGGCAGGATTCAGAGGAACAAAACTTGGACCATCATCACCTCTGTACTCAATGGAAGGAGGTATGTAATATAGAGCACCTAAAGCTGGTGGTCACTCTGCTTCTTTCTGGGTACCAGCGTTGCAAAACTAGGTAGCTTCGTAGGAGCTGAACGAATCCTTAAGCTAATTAATTAGCAATTAAGCCAAAAGGCATTTTGATAAGATGTTCAGGATTTTGTAAAGAGTTTACAGGTGTAGCTCTTCATTCAAGATCTGTTGTATACCACTTGTAATTGCATTACAACTTCTTTCTCCCATAGGAGAAAATGTTTCTTGTTCTGTCCCGTGTTGGGTTTTGCTTCCTCATATGGAGATGTGCTCAAAGAAGTCAGATTGGTGAATTGTGTTGTCCCTGACCACTCTCAATGCCCGTGACAAGAAACACCTGCTGTGCTTTTTTTAACCATTGTTAGGTCCAGCTCACCTGTGTCAAATGAGTTCCTCACCTCGAAGTGTTCTCAAGTGCATATAAAAATCTGCATCATTTTGTTAGCAGTGTACGTCCCAGAGTCATTTTCCTGCCAGAGTTCTGTGAGGACAAGAGGTTTCAGAGGTAATGAGCAGCAGCCCATCAAGTGTTTCTGCTGAAGGTGGTTGATACTTAATCTGCTTTGGAACTCTTAAAACACTGCTGCTACCACATGCTTCACTGGAGGTTCAGTCCCTTATGCCTGTACAGCTGATGAGCTGTGAGGAAATCTGTGCACCTTCCATTCAGCAAGGAATGGACAAAGATCTCGAATTAGTACTTCCATGCTTAAGCTTGATTTATTTCATTCTGAATTCTGTATCAGAATGATGCTTCTTTACCAGGAAGAAGCTGCAAGTAGGAAGGTTCTGCAGTGGGTGATACTGAGAGCAGTGCTATGCTGTAAGAGGCACTGACAGCAAGGAAATGTGCTGACGGACACCACTGAGACAGATCTGTCTGTCTGTCAGTCTGTCCTTCCACCAGTAAAAATACAGCAGTACCAGGTATTGCCTTCACTTGGCTTTCCATCTCAAAGCAGCTCAAAAACATGTCTTCTGTGCCACTACCCACTGCTTTCACTACAAAGTGAATGCAGGAGAACATCTCGTGCAGCTCTTTACCACGTTTAAAATAAATCTCTTCTTAAAAGGTGAGCTGTATGGAGAGCTTTTGGGCTCTCATGTATTTCACTCCCCAGTACCAGAAATCAGTTGTTGACCTTTTCCTGTGTTGGATACCTTCTGATACCTGGGGGAAGGAGGCATACCAGCTTGGCTTGCAACATGTTTTTATGATGCAGACTCCTCAAGATGCAATGTTGTCACTGACTCTGATGCCTCCTCCCACATTCTGTCTCTCCCAGCCTGAGACCATAAATAGAAACCTATTCCGTGCCCATCCCAACTGCCTGGCTTGGAGCTGTATTTCTTGGCACTATTCAATGGGTTGTTTACGGTACTTAAACCTCACACCGCTGTGGGAGGCCCAGAGACTAATTATGGATCTGTGCTCAGCTCAAACAAACCACATTATTAAGAGCCTGCTTGCTGGCAGGGGAGGAACACGTAGGAACAGCACTGAGTTGGGTTGCCCGTATTTTACCAAGGCCATATGTGAGCTGTCCGAATCCTTTTCAGCTGATGTTTTTCATGGCTGCACGTCAGCAGAAAGGCTAGGTGGTCCATCGAGGTAAGGCCTCAAGTCTGTTACGAGGGTAGAAAGTTCATAGGCCTGCTTCGATGCCGCTGAGTTATTAGCAGCTACTTGGCCTGGCCAGCAGTGGTTTGCTTCTTAAGATGGATGGAGTACTTCTGGTTAGTAGGAGGTGCTCAGATTTGGTTTCAGAAACAAAGCTACTGTAGACTTTGATACTGTTCCAGATGTGTCAGCAAAACAGGAAACCCTCTTGCTGCTGTGTTATCAATTTTGTGTCCTCATCTTCATTAATGCAGAAGGCCTCCCACTAACAGGCTGGTTGAAGCTCCTGAAGCCTAGCATGTGAGGTGATGTAAGTTTGGAGGATGCAGTGGGAAATGGCAGTTATACCAGGAGCCATTCCTTACTTGACAGTCCAGCTCCTGTGGTCCAGGCTGACTAATGCCTACTCCTTGTTACTCTGTTAGTCTTACCAGCAAGGGTATGAAATGAGATTGGGTAAAATTGATACTTGGTTTGAGAACCCCAAGTGGAAATAAAGTGACAGATGTGGATGCATAGGGATCTCAGTGGCCTGGTGTTCATGTGTCCTCTCCTAAAACAACGAAAGGAAACCCAGGATACCCACACGGTGCTTCTTGGTATTAAATGATGGTGTCAGAGTGACACTGTCCTGTAGCTCTTTGCCTCTCTTCCTTCCTACAAAGAAGTCACGTTGGCCTGCTGCCAGCAGCACCAGACCCCCTTAGAGCTGCACTGCTATTTGCACTTCTTTTGTTAGGAGACATTGATAGCCCATAAGTTCCAGATGTAGCAAGTTTTAAAAGCTGCTCATACTACTTATTTCAAAGTAGTGCAGTCAGCAGGATTTCCTTACGTTTCATTTTCTCATTGCTGGAAAAAACCAAAGCAATAGCTCAGAAGGGAGGATTTAAGTGGTAGAGGAAGGTTAAACACGCTCAGGAAACAGCTTTGAAGGGCACCTCAGGGAATAGCCCGAGGAGCTGGGAAAAGCTGCTCTGCCTGAAAGGTTGCTGCTTCGGTCAAACAAGTTGAGTGTACCAGAATTCGTGTCTTACATTGCGCACTTACTGTGAGGGGAATAGGAACAGGATGTTTGCTGTGGATGCAGATGTCAGAGTGATGGCCTACACGCTAGAATAACCACCAGCAACATCAATTTGAAAGAAACAATGCTTATCCTGAAGTTAGAAGCCTGGTTTCATTCTGCCTGGGTGCACGTGCCAGGCCTTTGCAAACCTACCCTCTGTGCAGGGATCCTGGTGCTCTGCCCACACCAGTGCTGGCTGCTGGCTCACTGCCCCCAGCTCACCTCCAGACCTGCTGGCCATCGCAGCTCAGAGGCCACAGACAGCACACTCAGTGCCCGCGTTTCCATGCTGCATTTGTAACCCAGATTCATCTTCTCCTAATCCTTCCTTGTTCCAGAGATATCACTGACACATCTGTTGTATCTTAACAACCAGGCTAATAACCATTTCACTTGTTAAACTATTGCAGCTGATACCAGTTGAGCAACAAATAAATATGTAGCTTGCCATTTCCAGATACCATTTCAGACTGACCTGAAAAGCTTATTTGCTGCGGTTATTTGCCCTGCATTTCTCTCACATTATTATTCTTTGTCTATTAATAAATGCACTATTTCAAATATCAGCATAATTAAGAGCATTCAGAGCACACAGGACAGAGAAGACAAACTGCAAAAGGAAGAACAGACAGGAAGAAGGCTGGGGGGTCACAGGTAAAAGCATCTCAACCTCCAGCTGCTGCATAGCCTGCAGCAGGATTCACAGAGCTTTGTGAAGGAGAAGGAAAGGATATCCTTCAGTTATCAGAAGAACTTTTGGAAGCCAACCGTGTGTAGTTGTTCTAATATATTCTGTCTGGTTGTGATTCCCACTTGCATTACTGATGGGGGAGAGGGGAAAAACTCATGGCACAGCTCACACAGGGAGAAGCAACTCTTTGCACAGCCTGCATCCAGCCTACATCCTTTCGGTAGTGACTTTTCACATCCACAGCCTTACAAAAGGCATACACTTCTAACAAGCCTGACTGCTCGTTTCTTACCTTCAGTCTGAGCTGTGCCCTCCTCACACGCAGCAGCTGCCTCCCTCACAGAGCTCACAGCCGTAGAAATGCTGCTCTTGGCTGCTAAGGTGCAGCAGCTCCCACCCCCCTACAAAAGGCCAAAGCACGTACTGCCCTTCCCCTGCTGCCTTTTATACCCCTCTGCAGGCCCACCAGCCTCCCAGGTGTGGGACTGCCACGGTGATTGCTTGTTCTTTAACCCTTCCTCCTCTGCATTAGAAAGAGTCTGTTCTGCTCCCAGCCCTGGGGACTGCTGGAGAACCGGGGCTCCTGAGGGCTCCCCCAAACAGATCTCATGTTTGGCACAGGTAATTTGGTGGTGCCCTTTCAGAGAGCTGAGCTGAACCTTAGTAGGTGAGCAGCTACGCGGCTCAGACTGGGCATGCTGTGTTGCCTCTGCTTTCTGTTTCCAACAGCGTTTTCTCCTTCAGTGCTCATACATCTGCCGGGCTTAGCGGTGTCACTCGCATCACTTCCGCTTAGTTCATGTGAATGGGACTCCTGCACTGGCATGGATGTGGAGTGGAAAAATGAATCAATCTGGGCGGTCCCTCTAACGAAGGGTCCGCAAGAAAGGAATTTCTCCAAGGAAACGGTTTGTTTTCTCCCCAACACTTTGCTGCCTGACTCCTGGCGGCACACAGCTCTGCAGCTCACCACCTCCGCACCCCTGGGTTGTTCGGGGCTCCCTGGGAAGCTCCACCCTTCCTAACCCAATAACCGCAGCCCGAGTGAGCTCCCTGGCTCCTCCTCCGCCCCATAGGCTGCTCTTGCTTTTCCATTGGCCGCCAGTGCTGTCCGCACGTGGTGGCAGCCCAGCGCTTCTGGTGGCACTCAGTTGGCCTTCTGCTTGCTGTGCAGCACGGCATGATTGTGGGCACGGTCCTGTTCCAGCCCAGCAGCTATGGCAAAGAGAACAAGCTGCTCTGCTGCCTTGGCAACGATGCCTCTGAGCCTGCTGGGTCGAGCTTCACAGGTAGGATGCTTGGGGAGACTGCGGTGTTCCTGCACTGCCCTGTTGGCTTAAAGGAGGGTGTGGGTCCTCTCAGCTCTTTGTCCTGCGTGGGAGCAGGACTGAGATCGCCTGCTTTTCTTTGGGGTTATCAAAATGCTTTGTTTCTACCAGCGTTAGCATTTCAGAGAAACAGACCGTGTCAGCACCTGATGTGGTCCTGCTGTTGAAGATGAGGTGTATGCCGGGCTCTCATCCTCCTCTTGGACTGAAGAGATCTGTAATTGTAGCCTCAGTGGCACAGGGTGGGAGGCAAAATGTCTCTTAGGTGGTGGCTGAATAGGAAAGCATTCATGTCCGGAGGGAAGCAAAGTGTATGGTGGGAATAGAGGAGAGGAAGGAGGTGGCTGAAGCATAACCTTGCTTGTAGACTAAATGATGATGTAAGTTTTCAATTGTATAGGAAATGAAAGCAATAACATACGATTTGTGGTTAGGCTTTGAGTTGATGTAAAAGAGAACTTCCCAGTTCACTTCCTCGCCCTTGGTGTGACCGGAGCTCGCGGCCTATTCAGTGTGGGGCGTATCCTTTGTGGTGTGATTTGGCTATCTCAGTTTCCTTACCCAGCTCTTTGTGATTACCGTATTGAACTCAGCTTTCTTACCCTTGCACATGGGATGGCACGGATCCCACGCCGTATTGAGCACTGCAGGTTATTAGGGGTTGGATGCCCGGTATGTGAGTTGTGCCGGCTTGAAAAGGAATCCTAAGCTGTACGTTGGATTCTGTACTCCGTAAAGAGAGCTGGATTTAGGAACCACTGTTCTTTTCTGTTGCCACTTAAGCTGTTCCTGATGCATAATTGCACGTGCATGTGCACAAACGCAGCCCTGAAAAGCAGCAGCCTCGTGCTGGCAGCACAGCATTATTACTCTTTATCTGACAGGCTGGGATGTTGGTAATTGCAGGTGATGGTTAAGAGCAAGGAGCATGGAAATACTGCACCTGCAGAGAACAAAGCCGTGCTTTGGTAGCTGTGGCTCTGTCACTCCTGCTCTTGCTGGGGGAACCTCGACAGGGAGGCACTTAGTCACGGCTGGGAAGCAAGTTACTGGAGCAGTGGGATTACCAGAAATGCAGGCAAAAGCCACTTAGCTGTGTGTTTGAGAACAAACTAACAAACCTCAGTCATTTCCTTTCCCACGTATTTATAATACAGCTTAAAAAAAATTGAACATGGATTCTGGGAAACCCCCTGCACTGAAGTTTTCCAGGCTTGAGCTCCATCACGTGACACGGATTGGACACGTGTTTGCCTGGTGCTTGGCACAGGCCTCTTCCTGTTCTGTCTCCCTGACTTCCCAGCTCTCCCATTGCGTTGCTCTCGAGCTCTTTGTTCTCCCCACGTGCCATGTAGAGTGGCTCTTGCTCACGTATGTCAGTCCCGTGAGAGTGTGTGGGCATTGGGAACACGTGGTGGGGCAGGAACGGCCTTCAGTTGTGCCTTCGAAAGCATTACTTACACCCTTACACTTGCACATATTTTTGCCCCACGTGTAAGTTAAGTGCCCTGTCTTTCTTGTGTCTTCACACTGAAGTGCAGCCGGCTGCTTGTTCCCGGGGAGACCTCAGTATGGATTAGAAAACCATTTTTCTATGAAAACCATTTCAAGACCGATCGTTCCTCCCACTTCCCTGTACTAACAAGTGTGCGTCATTTGAAGCAGTAGAACAGAATTGCCCTGCGTTCAGGAGCACTGCTGCTAAATACACCTCGTGTTACCCTTATTACTTTCTATCCCTGCCAGTTTACCACTTCTTTATTTGCGTAGCCTGAAATGTGTCACAAATGGCTGCCATTCCTACTCACACTGACTCGGTTACTGTTGCATATTAGTTGTCATAATTCGATCTGTTTTACCTCTATTCCTAACATTGCTTTCAAATGCAAGCTACTTACTTCAGGCACGGAAACAAAGATTGAAAACATAACGTTGCAGACTTTAAAAGCTTTCCTTCACTTCTTCACAGCAGAAGAGCCTTTTTATTGGGAGCTCTGCTCTGCTGTGCGCCGGGCTTTGATTTACTTCCAGCTGTAATTTCCTCTTCTCCTCTTCCTTCAG
Seq C2 exon
AGGCCCTGCACCGCCCCTATGGTTGCGATGTCGAACCCCAGGCACTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTGGGAGCCACCGAGAGCGATCCCAACCTCTTTGTTGCACTTTATGATTTTGTAGCAAGCGGTGACAACACGCTCAGTATCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(38.3=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]