HsaINT0003956 @ hg19
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:1366]
Coordinates
chr9:136323032-136324508:+
Coord C1 exon
chr9:136323032-136323216
Coord A exon
chr9:136323217-136324095
Coord C2 exon
chr9:136324096-136324508
Length
879 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
GGCTGCCCCTTTTCTCTCAGATC
3' ss Score
9.34
Exon sequences
Seq C1 exon
AATGTGACATGCAGCTCTTTGGGCCCTGGGGTGAAATCGTGAGCCCCTCGCTGAGTCCAGCCACGAGTAATGCAGGGGGCTGCCGGCTCTTCATTAATGTGGCTCCGCACGCACGGATTGCCATCCATGCCCTGGCCACCAACATGGGCGCTGGGACCGAGGGAGCCAATGCCAGCTACATCTTG
Seq A exon
GTGAGGCCCAGCATGGGGACTTGTGCTGTGATTCTGGACAGCTTTCCCTAGGGCGTGCAGGGCTAGGGGACCCCCTTCAGTTTATTTCAGACTAAAACCCTCAAAATCATTAGTGAAAGAATGGGAGAAGATAGCTTCCTCCACATATTCACCAAGAAATGTTTTTTGAGCTACCTACAAGAGTGAAATAGTGGCTCACAACTGTAATCCCAGCACTTTGGGAGGCCCAGGAGGGCAGATCACTCAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGATGAAACCTTGTCTCTACTAAAAATAGAAAAAGTAGCCAGGCATGGTGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCGGGAGGTGGAGGTTGCACTAAGCCCAGATCGCACCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGCGAAATGGTAAAGAATGGTAAAGACCTTTCTGATGTAGACTGACAGCTAACCCAAGACTGAAGCATAATTTTACAGTCTGATATAACTTGGACAGAATAGCACCCTGCACCCTCCCCGAGGTTTCAAGTGTCCTGGGAGAACTGTGTTCTGCAGGGTATCAGCTTCCCCAGAGGAGGCAGCCTGGCCCCGCTCTGGCACCCTGACTGTGTGTCCTTGGGGAAGTGATGTAACGTCCCTGGACCTCGGTTTTCTGGGTAGAGTAATGGCGTATTCCTAGTAGGGCTTTGTAAGCATTAAATGTGATCCGGAATCTGTGAGCCCTTGCACACGAAGGCTTCCGTGAGTGCTAATTATTACTTGTGGCCGGTCCTTCTGGGCTGCCCCTTTTCTCTCAG
Seq C2 exon
ATCCGGGACACCCACAGCTTGAGGACCACAGCGTTCCATGGGCAGCAGGTGCTCTACTGGGAGTCAGAGAGCAGCCAGGCTGAGATGGAGTTCAGCGAGGGCTTCCTGAAGGCTCAGGCCAGCCTGCGGGGCCAGTACTGGACCCTCCAATCATGGGTACCGGAGATGCAGGACCCTCAGTCCTGGAAGGGAAAGGAAGGAACCTGAGGGTCATTGAACATTTGTTCCGTGTCTGGCCAGCCCTGGAGGGTTGACCCCTGGTCTCAGTGCTTTCCAATTCGAACTTTTTCCAATCTTAGGTATCTACTTTAGAGTCTTCTCCAATGTCCAAAAGGCTAGGGGGTTGGAGGTGGGGACTCTGGAAAAGCAGCCCCCATTTCCTCGGGTACCAATAAATAAAACATGCAGGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-ADAMTS13:NM_139027:28
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACATGCAGCTCTTTGGG
R:
TGCATCTCCGGTACCCATGAT
Band lengths:
353-1232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)