GgaINT0124815 @ galGal3
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
NA
Coordinates
chr17:7592149-7593226:+
Coord C1 exon
chr17:7592149-7592333
Coord A exon
chr17:7592334-7592609
Coord C2 exon
chr17:7592610-7593226
Length
276 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTGGTCTTTCCTCACCCAGATC
3' ss Score
8.87
Exon sequences
Seq C1 exon
ATTGTGACAAGCAACTGTTTGGTCCCCATGGTGAAATAGTGAACCCTACTCAATCACCTGGTCAAAACCAAGAAGTGGTGTGTCGGACCTTCATCAATGTGGCTCCTCAGCACCACATAGCTATTCGAGGCCTGTATGTTGACCTGAGCCATGAGAGCAACCAAACACACTTTAATTACATCCTG
Seq A exon
GTGAGTTGGAAACCTAGAGGAAGGTGGTTTAGATGGGTGAGGACCCAACTGCTCATTAGAGGTTTCCATCCAGGTGCCAAGTTCAAAGTCCAGGAGAATCAGACTGTTGTGTAAATGTAGATGTGAGTGAGCAATACTGAAATCGGCCATATTTTGCTCTAACATTTGAATAGGGCAGCTTTTCCCCTGAGTAACCAATTGGCAAGACCCCAGTGTTTTGTGGGTACTTGAGATGCAGGCTTCTGTGATATAATGGTTTGGTCTTTCCTCACCCAG
Seq C2 exon
ATCCGTGATGTAAGCACCATGAAGACAATGGTGTTTCGTGGGAAACAACAATTCTTCTGGCAATCAACAGGAAGCCAAGCTGAAATTGAATTTCATGAAAACATTAAGGATCACCAAACCCGTTTCTGGGCTGAATATCATGCTGCTGAACCCAAATAAAAGGGATCAGGGCCACTATAGTGAGAAAGACTGTGTACCAGTTAATCACTGCTGCCTGTTCACTGCTTGATGTCGCACACATCATTTAACCTTTTTACAGCTACTTCTCCATCTACTGAGTAAGAGTTAACTGAGATCCCAGTGGAGTCAGTAAATACTTAGAACATTTATGCAACAGGCATGTAACCACCAAATATTTCACAAATAGTTTTAATGTGAATTTTCTACGTTAATCGGTGTTAATGCATCTTACTTGTCTGGAATTAGTGACTTGGACACTGAAGTCTCATGGGTGATTGGCCTGGTCAAATACTGGCGACAACTGGCTTTGCATGGGAGGAGAAAATGACCTCTGGAGGGTCCCTCCCTGCCCACCACATCTGTGATTTTGCTTTCACGTACCTAACAGTGGTGCTAGTACTTCTTTTCTATGGGAAAATAAAGTAATCCTGTCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.1=96.8)
A:
NA
C2:
PF0043115=CUB=PD(42.1=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTATGTTGACCTGAGCC
R:
ATGTGTGCGACATCAAGCAGT
Band lengths:
297-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]