GgaINT0124815 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6924099-6925818:+
Coord C1 exon
chr17:6924099-6924283
Coord A exon
chr17:6924284-6924559
Coord C2 exon
chr17:6924560-6925818
Length
276 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTGGTCTTTCCTCACCCAGATC
3' ss Score
8.87
Exon sequences
Seq C1 exon
AATGTGACAAGCAACTGTTTGGTCCCCATGGTGAAATAGTGAACCCTACTCAATCACCTGGTCAAAAACAAGAAGTGGTGTGTCGGACCTTCATCAATGTGGCTCCTCAGCACCACATAGCTATTCGAGGCCTGTATGTTGACCTGAGCCATGAGAGCAACCAAACACACTTTAATTACATCCTG
Seq A exon
GTGAGTTGGAAACCTAGAGGAAGGTGGTTTAGATGGGTGAGGACCCAACTGCTCATTAGAGGTTTCCATCCAGGTGCCAAGTTCTAAGTCCAGGAGAGTCAGACTGTTGTGTAAATGTAGATGTGAGTGAGCAATACTGAAATCGGCCATATTTTGCTCTAACATTTGAATAGGGCAGCTTTTCCCCTGAGTAACCAATTGGCAAGACCCCAGTGTTTTGTGGGTACTTGAGATGCAGGCTTCTGTGATATAATGGTTTGGTCTTTCCTCACCCAG
Seq C2 exon
ATCCGTGATGTAAGCACCATGAAGACAATGGTTTTTCGTGGGAAACAACAATTCTTCTGGCAATCAACAGGAAGCCAAGCTGAAATTGAATTTCATGAAAACATTAAGGATCACCAAACCCGTTTCTGGGCTGAATATCATGCTGCTGAACCCAAATAAAAGGGATCAGGGCCACTATAGTGAGAAAGACTGTGCACCAGTTAATCACTGCTGCCTGTTCACTGCTTGATGTTGCACACATCATTTAACCTTTTTACAGCTACTTCTCCATCTACTGAGTAAGAGTTAACTGAGATCCCAGTGGAGTCAGTAAATACTTAGAACATTTATGCAACAGGCATGTAACCACCAAATATTTCACAAATAGTTTTAATGTGAATTTTCTACGTTAATCGGTGTTAATGCATCTTACTTGTCTGGAATTAGTGACTTGGACACTGAAGTCTCATGGGTGATTGGCCTGGTCAAATACTGGCGACAACTGGCTTTGCATGGAAGGAGAAAATGACCTCTGGAGGGTCCCTCCCTGCCCACCACATCTGTGATTTTGCTTTCACGTACCTAACAGTGGTGCTAGTACTTCTTTTCTATGGGAAAATAAAGTAATCCTGTCTCTTAATGATGAGTTTAATGCCAAGAGATATTTCTTCAGATAATAACAGTAGCTGCACTAATTATCTACTTATATCTGCATCTCACAGGAACTGTGTCAAGAGAGGCTGTTGAAACTGTGTGATACAAGTTGTAGCAGGAAGAGGTGTTTTAGAGCAGCAAATAGTCACTCACGATTGACTTATATATATTTAAACTTCTTTTTATTTAACATTTTTAACCTTTTCAGCAGTTCCCTACCTTGGTACAAATCTATCATCCTCATCAACTTCTCAGTATCCTACACAAGAGGTCTTTTCCAAACCTGGAGCCTGGCTGGACATACCTGCCTCTACACTTGATGATAGATGCAATAAATGCTTCTGCTTGGGCAGTTTTAATGCTACCTCTGCTTTCTTTCCATTCAGTTCTCTGATGTCTTTTTACAAGCACAAAATCTTATTTTCTTCTGTCGTCTTAGTGATTAGTTTTGCTAGTTCTGCCTGGATTTGTTTGGGTTTTTTTGCTTGCCAGCCTTCAGATTTACGTTCTATTCCTGGAAGAGCTAGAAAGTAGATTCTTTAAGCAAGATCCTTGAGAAGCTGAATATATCAGCTGTCCCACTGCAGTGTGTGGGTGATACAGGCACTGGGCCTTTATTTCCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTGTTTGGTCCCCATG
R:
CCCAGAAACGGGTTTGGTGAT
Band lengths:
306-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]