BtaINT0014001 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104406357-104407288:+
Coord C1 exon
chr11:104406357-104406541
Coord A exon
chr11:104406542-104407132
Coord C2 exon
chr11:104407133-104407288
Length
591 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
GGCTGCCTCTTTTCTCCCAGATC
3' ss Score
9.37
Exon sequences
Seq C1 exon
GATGTGACATGCAGCTCTTCGGACCCCGGGGCGAAATCTCGAGCCCATCGATGAGTCCAGATGGGAGGAACGTGGGGGGCTGTCGCATCTTCATCGACGTGGCCCCGTGGGCCCGGATTGCCATCCATGCCCTGACCGTGGACAGCGGCACCAGAGCCGAGGGAACTGATGCCAGTTACATCTTG
Seq A exon
GTGAGGCTGCTGGGATGGGGACAGGAAGGGCTGACTTCTGCTATCATTCTGGACAGCCGTCCCTGGGGACAGGGGGCAGGGACTGGACTGGGCCACTGAGTCTACTTCAGACCAAAATCCTCAAAATCAATGAATGAATGGGAGATAAGTTTCTTCCATTTATTCACCAACAAATGTTTCTTGAGCTCCCTACAAGAATGAAATACAGAACTGGCTGATGTAGGCAGCCGGTTCACCCAGGACTGAAGCATAATTTTAGCACATCAGATAATTTTACTGGAAGAGTAGGCCAAGCCCTCCCTCGATGAGCTTTGGTGTGTTCTGGGCGAACTGGCCTCTGTAAGGTATCAGCTCCCTGCAGGAGGCTGTCTGGCCTCTGTACAAATCTGGGCTCAGATCCCAGCTCTGGCATTCTGGCTGTGTGTCCTTGAGGAAGGAGTGCAGCTTCTCTGAGCCTCAGTTGCTCAGGTAGAATAACAGCGTCTTTGTGATGGGCTGTTGTGTGACCTGGGTGTACGATACTTTACACATAAAATGCTTATGCTAATTATTATTTGTGGTCGGTCCTTTGGGCTGCCTCTTTTCTCCCAG
Seq C2 exon
ATCCGGGACATCCACAGCCTGAGGACAACAGCATTTCGTGGGCAGAAGACGCTCTACTGGGAGTCAGAGGGCAGCCAGGCAGAGATGGAGTTTAGCCAGGGCTTCCTGGAAGCACACGCCAGCCTTCGGGGCCAGTACTGGACCCTCCACACGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGACATGCAGCTCTTCG
R:
CCAGTACTGGCCCCGAAG
Band lengths:
326-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development