HsaINT1002774 @ hg38
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133457910-133459386:+
Coord C1 exon
chr9:133457910-133458094
Coord A exon
chr9:133458095-133458973
Coord C2 exon
chr9:133458974-133459386
Length
879 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
GGCTGCCCCTTTTCTCTCAGATC
3' ss Score
9.34
Exon sequences
Seq C1 exon
AATGTGACATGCAGCTCTTTGGGCCCTGGGGTGAAATCGTGAGCCCCTCGCTGAGTCCAGCCACGAGTAATGCAGGGGGCTGCCGGCTCTTCATTAATGTGGCTCCGCACGCACGGATTGCCATCCATGCCCTGGCCACCAACATGGGCGCTGGGACCGAGGGAGCCAATGCCAGCTACATCTTG
Seq A exon
GTGAGGCCCAGCATGGGGACTTGTGCTGTGATTCTGGACAGCTTTCCCTAGGGCGTGCAGGGCTAGGGGACCCCCTTCAGTTTATTTCAGACTAAAACCCTCAAAATCATTAGTGAAAGAATGGGAGAAGATAGCTTCCTCCACATATTCACCAAGAAATGTTTTTTGAGCTACCTACAAGAGTGAAATAGTGGCTCACAACTGTAATCCCAGCACTTTGGGAGGCCCAGGAGGGCAGATCACTCAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGATGAAACCTTGTCTCTACTAAAAATAGAAAAAGTAGCCAGGCATGGTGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCGGGAGGTGGAGGTTGCACTAAGCCCAGATCGCACCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGCGAAATGGTAAAGAATGGTAAAGACCTTTCTGATGTAGACTGACAGCTAACCCAAGACTGAAGCATAATTTTACAGTCTGATATAACTTGGACAGAATAGCACCCTGCACCCTCCCCGAGGTTTCAAGTGTCCTGGGAGAACTGTGTTCTGCAGGGTATCAGCTTCCCCAGAGGAGGCAGCCTGGCCCCGCTCTGGCACCCTGACTGTGTGTCCTTGGGGAAGTGATGTAACGTCCCTGGACCTCGGTTTTCTGGGTAGAGTAATGGCGTATTCCTAGTAGGGCTTTGTAAGCATTAAATGTGATCCGGAATCTGTGAGCCCTTGCACACGAAGGCTTCCGTGAGTGCTAATTATTACTTGTGGCCGGTCCTTCTGGGCTGCCCCTTTTCTCTCAG
Seq C2 exon
ATCCGGGACACCCACAGCTTGAGGACCACAGCGTTCCATGGGCAGCAGGTGCTCTACTGGGAGTCAGAGAGCAGCCAGGCTGAGATGGAGTTCAGCGAGGGCTTCCTGAAGGCTCAGGCCAGCCTGCGGGGCCAGTACTGGACCCTCCAATCATGGGTACCGGAGATGCAGGACCCTCAGTCCTGGAAGGGAAAGGAAGGAACCTGAGGGTCATTGAACATTTGTTCCGTGTCTGGCCAGCCCTGGAGGGTTGACCCCTGGTCTCAGTGCTTTCCAATTCGAACTTTTTCCAATCTTAGGTATCTACTTTAGAGTCTTCTCCAATGTCCAAAAGGCTAGGGGGTTGGAGGTGGGGACTCTGGAAAAGCAGCCCCCATTTCCTCGGGTACCAATAAATAAAACATGCAGGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323:ENST00000371929:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACATGCAGCTCTTTGGG
R:
TGCATCTCCGGTACCCATGAT
Band lengths:
353-1232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains