HsaINT0007982 @ hg19
Intron Retention
Gene
ENSG00000091879 | ANGPT2
Description
angiopoietin 2 [Source:HGNC Symbol;Acc:485]
Coordinates
chr8:6357175-6366583:-
Coord C1 exon
chr8:6366453-6366583
Coord A exon
chr8:6360783-6366452
Coord C2 exon
chr8:6357175-6360782
Length
5670 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TCTGTGTTTTACTTTCACAGGCT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GATTCACCTTAAAGGACTTACAGGGACAGCCGGCAAAATAAGCAGCATCAGCCAACCAGGAAATGATTTTAGCACAAAGGATGGAGACAACGACAAATGTATTTGCAAATGTTCACAAATGCTAACAGGAG
Seq A exon
GTAGGGATGACTTTCTGTCTTCCTATTTGTATTGGCAAGGAATGATTTCATAGAGGGAAAGGCTGGCAATTTGGACTACAAATTGTGATTTGTAACGATGTCCACAATTTCATACGTAGACACACTAGCTTGATATAGGTAAATGTGTTTTTCACTTTTTTTAGACTAAGTTTTAAGTGAGAATATGATATGGAGCTAGACTTGTCAGCAAGCCAACTGTGTCTCCTCAGGACCTAGCCCTGGCAAGGAGAGGGGATATTTGATTCTTAGCAAGCTCTCCTGCGTTTGTGCTTGCTGGATACTAGAGAGATGGTTTAATTACATTTTGCTTTATGTAAAAAGTTAAAAATTCCAAGTAGCAACCACAACAGTAATATAGATTATAGAAATATTTCCAACTAATAATTTAATGTTCAAAGAAGGAATTTCCAGCTGTCATTTATTATTTATTTATTTACAGACACAGTCTCCAGTTGTTTATTTATTTATTTTGAGACAGAGTCTTACTTTGTTGTCCAGAAGGGAGTGTGATCGCAGCTCACTGCAACCCCTGCCTCCCAGGCTCAAGCGATTCTCCTGCCTCAGCCTCCCCAGTGCTGGGATTATAGGCGCCCACCAGTGCACCCGGCTAATTTTGTATTTTTAGTAGAGGGAGGGTTTCACCATGTTTGCCAGGCTGGTCTCGAACTGCTGACCTCAAGTGATCTGCCCGCCGCAGCCTCCAGAAGTGTTGAGATTACAGGTGTGAGCCACCACACCCGGCCCCAGCTGTCTTTTTAAAAAAGATTCCATTAATATATAGCAACACCTATAAACACAAATGAGTTAATCCACCTTTTTTAGTAAATCAAATTAAAATGAGTCATCTTCTACTTTGAGACCTTTCTTGTATTGTAGGTTTGGTATTACACTGCCATAAAACAGACAATGAAAACCACACTCATAAGCCAAAAACCATTGTAGTAGTCACTTAAAACAGATGGGTTGGTATTCAGAAACATTTGAGAGTTCAAACATAGGAATAAAGTTTTAGAAAATGTTATTTTTCTGGCCGGGCCCGGTGGCTCACGCCTGTAATGCCAGCACTTTGGGAGGCCAAGGAGGGCGGATCACCTGAAGTTAGGAGTTCAAGACCAGCCTGGCCAACATGTTGAAACCCCATCTCTACTAAAAATACAAAAATTACCTGGGCATGGTGGCTGGCACCTGTAATCCCAGCTACTCCTACTCAGGAGGCTCAGGCAGGAGAATGGCTTGAACCTGGGAGGCAGAGGTTGCAGTAACCCAAGATCGTGCCACTGCACTCCAGCCTGGGGGACAGAGCAAGAATTCACTCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAGTGTTATTTTTCTGATTTGTTAAAAGTTTAGAAATTCACTGACAGGAACAAACGCTACTTAGTGACTGAGACAAGAAAAAAGTGTGACAAATGCTGTCAAGTTAGTTCTTGAAAAACACTGAAAGATTTAAAGTAGCAACAAAAACTCTGCCAATAGTGCAAAATGAATGTAAAGAATAACAGGAAAATTGGCAGGGTTTAATTTCTAGAGAACATAAATCATATCTGCAAAAATTAATATGTTACCCACCCAGGAAAACCAAAGGTAACAGCTATGGTCAACATGTTTTATAAATGAAAGTTACTACATTAAACAAATGGATGACCCAAGTTATGATGCATTTACACTATAGGAATCATTAATAGGGCTGGGCATGGTGGCCCCCGCTTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGATGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCATACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAAAATCTCTTGAACCGGGGAGACAGAGTTTGCAATGAGCCGAGATCGCACCAGTACAATCCAGCCTGGACGACAAGAGTGAGACTCCGTCTCAAAAAAAAAAAGCATCATTAACAGTCAAAAGGAGGATTTAGTAATGAAAATAATATGAAATTCAGTAATTTTCATGTCTTTAAATTTCATGCCTTTTATGCTGAAAGAATCAGGCCTCATTAAAAAAAAAAAAAAAGCAATCCTCTGGTTCCTGAGATAATATGACTACTATTTGGTACCACAGGTCCTCCCTATGTTACACCATTATTACACCAATGAGCAAAGCCCTCCTATTGATTTTGCAAAAGCTTCCTGTTTCCTTCATCCTGGCACAATCATCCTTTTTAAAGCTGAACAGCAGGGAAAGGGTCAGGTGGAGGAGCCACAGACACCTAGGACTTTGTTTCCTGTCTACCATTTCCCCACATGCTGGACCCAGCTCTCTCCTTGAGAAGGGTGTGCTTATTAGACCACCCGTATGTGCTGAGCTTCTCAGGAGAGTAGGAGAATTGCATTAATAACCAAGGAAACAATATATTTACTTAGGCAAATCAAGATTTAGGGACTGAGAATGTAATTGGAAAAGAGACTGGGGAGAGGAAAAACAGCCCAAGAGAGAAAGTGGAGTGGTCTTGCCTGTGAAGAGGTCAAATTCCAGCCAGTGGTCTGGACCATGAATGAACCAGCCTAATGAGCAGCTCCATTTTGCATGGACAGCAACTTCTCTAGTTGGACAAGCTCCAGAAGGCACTGACCTATGAATCTGTCAAAGTCCTGAATATGTGAAGGATTCTGAATAGAACACGCAAACTTCCGTCCAATCTGCATTCACCTGAATCAAATGAAGTCACTGAGCTGTTACCACCAAGAAACAATGTAGGAACCTGGATGAAATAACAAACCAATGTATAAACACAACATATATATATATAAAGAATATATATATGTTTTTATATATATACATATATAAAGAATATGTATATGTTTTTATATATACAAAGAATATGTATGTTTTTATATATACATATATAAAGAATATGTATGTTTTTATATATACATATATAAAGAATATGTATGTTTTTATATATACATATATAAAGAATATGTATGTTTTTATATATACATATATAAAGAATATGCATGTTTTTATATATACATATATAAAGAATATGCATGTTTTTATATATACATATATAAAGAATATATATATTCTATATATACGTATATATAAAGAATATATATAGAATATATATAGAATATATATACGTAATAAAGAATACATATATTCTATATATGTAAAGTATATATATTCTATATATAAATAGATATAAAGAATATATACATTCATATATAAATATATAAAGAATATATATATTCCATATATACAAAAAGAATATACATTCTATATATACATATATAAAGTATATATATTCTATATATACATATATAAAGAATATATATTCTATATATACATATATAAAGAATATATATATTCTATATATGTAAAGAATATATATATTCTATATGTATATAAAGAATATATATATTCTTTATGTATATAAAGAATATATATATTCTATATACATATAGAAAGAATATATATATTCTATATACATATAGAAAGAATATATATATTCTTTCTATATGTATATAACATATATATGTTATATACATATATATGTATATAACATATATATGTATACATATATATAAAACATATATAAAGAATATATATTCTATATATACATAAGAATATATATATATATTCTATATATACATAAGAATATATATATATATATTCTTTGGCATAGAGTTTTTATTAAGAAATAATGCATTACGGGTAAGGCTAAAGAGGACCTGCCAGTGCCATTCCCTACCTGACGCTTGGGTCGAGGTTAATTCACTTTATTTATTAATTTTCCTACATATGGAGATATCAATCATAATTATTTTCTCTATTTTAAAAATTAATATAAGGAGTATCATACTGTATGTGTTCCTCCAACACAGTGTTGTTGAGATTTATTCAGTTTAACATATGTAAAATCAAGGTTACAGCAGTCCTCCCTTATCCTTAGGGGAAACATTCCAAGATGTCCAGCAAATGCCTGAAATCACACACAGTATCAAACCCTATGTGTATATTTTTTCCTGTTCACACATACTTACAAAGTTTAGTTTGTAAACTAGTCACAAGAGACTTAACAATAATAAAACTGAATAATATACAACATATTGCTTCCAATTTCATGGATATAAGATTTGTTCTTCTATAGATCTTAGCATCCTTAGTGTACGATTTTTTTCTCTCCTTATTAAGTCAGGAACTTTCACCTTTTCACTTAAAGGAAGCACTTTACAGCTTCTCTTTGACATATCTGAATTGCCAGCATCATCACTCTTGCACTTTTGGGGCCATTATTAAGTCAAATAAGCGTTACTTGAACATAAGCACTGCGATACTGTGACAATCGATCTAATAACCAAGACAGCTACTAAGTGATCAGGAGACCGGATGTAGACAGCGTGGATCCACTGGATAGAGGAGATTATTCATGTTCTGGGAGGGATGAAGTGGGCATCAGGAGATTTTATCCCGTTACTCAGAACGGCATGCAATTTAAGGTTTATACATTCTTTTTTTTTTTTTTTTTTTTGAGCTGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGTCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGGTCTCCTGATCTCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCCCTGCTTATAGAATATTTCTAGATTTTTCCATTTAATATTTTTGGCCCAGCTGACTTCAGGTATCTGAAAGTGCAGAAAGCAAAAATAGCAGATAAGGGGGGACTACTGTGTTTCTTTCTCTCACAAACCCCAGCATGCTCCTGTTTTTGGCCAAGCCCAGAAATTAAGGTGCAGATGGGGCTTCACTCCCACAGCCCCTGTGCTGGACACCTCTCCTGCCCTGGCTTTAGCTGAGCGAGCACACACTCTCACTTTAAATTTCCTTTTTGTCTCTGAAACATAGAGACTTCCTTTTTATGTAGCTCCACTGAGTACTTAATATTTTAGTTTAAACTTCAACCGAAAAAATCATTTAATAGAGCAAGGGGAGCCTGAGCGAGTCCAGCCCACCATGTTGCTGGGACTGCAAAGTAATCCTGGTTGAAGGAGAGTTTTCCAACTGTGCCTCAGATGTTTGCTTACTCCTGCTGTAAGTGTGTACACACTGTGGGCTTACCAAATAGGACTGTGGAGAATTCAGGCCTCTCCACACAGCACAAGGGAAAAGGTGGAAGAAGGCTTGTAAAAGCATTTGCCGTAATGGAACTGTGATGTCATGGGTGTATGGCTGGAAAACAATCCCTCTGCCAGTGCACATCCTATACTCACCATCATCTGCATGTGCCTACTCCACACGCCTGCAGTGTGCCTCCTGCCTTAGCTGAGTATTGCTGTCTTCGTGGTGGGAGCTGGCATCACCTAGTTCCTAATTCCTTCTGTGTTTTACTTTCACAG
Seq C2 exon
GCTGGTGGTTTGATGCATGTGGTCCTTCCAACTTGAACGGAATGTACTATCCACAGAGGCAGAACACAAATAAGTTCAACGGCATTAAATGGTACTACTGGAAAGGCTCAGGCTATTCGCTCAAGGCCACAACCATGATGATCCGACCAGCAGATTTCTAAACATCCCAGTCCACCTGAGGAACTGTCTCGAACTATTTTCAAAGACTTAAGCCCAGTGCACTGAAAGTCACGGCTGCGCACTGTGTCCTCTTCCACCACAGAGGGCGTGTGCTCGGTGCTGACGGGACCCACATGCTCCAGATTAGAGCCTGTAAACTTTATCACTTAAACTTGCATCACTTAACGGACCAAAGCAAGACCCTAAACATCCATAATTGTGATTAGACAGAACACCTATGCAAAGATGAACCCGAGGCTGAGAATCAGACTGACAGTTTACAGACGCTGCTGTCACAACCAAGAATGTTATGTGCAAGTTTATCAGTAAATAACTGGAAAACAGAACACTTATGTTATACAATACAGATCATCTTGGAACTGCATTCTTCTGAGCACTGTTTATACACTGTGTAAATACCCATATGTCCTGAATTCACCATCACTATCACAATTAAAAGGAAGAAAAAAACTCTCTAAGCCATAAAAAGACATATTCAGGGATATTCTGAGAAGGGGTTACTAGAAGTTTAATATTTGGAAAAACAGTTAGTGCATTTTTACTCCATCTCTTAGGTGCTTTAAATTTTTATTTCAAAAACAGCGTATTTACATTTATGTTGACAGCTTAGTTATAAGTTAATGCTCAAATACGTATTTCAAATTTATATGGTAGAAACTTCCAGAATCTCTGAAATTATCAACAGAAACGTGCCATTTTAGTTTATATGCAGACCGTACTATTTTTTTCTGCCTGATTGTTAAATATGAAGGTATTTTTAGTAATTAAATATAACTTATTAGGGGATATGCCTATGTTTAACTTTTATGATAATATTTACAATTTTATAATTTGTTTCCAAAAGACCTAATTGTGCCTTGTGATAAGGAAACTTCTTACTTTTAATGATGAGGAAAATTATACATTTCATTCTATGACAAAGAAACTTTACTATCTTCTCACTATTCTAAAACAGAGGTCTGTTTTCTTTCCTAGTAAGATATATTTTTATAGAACTAGACTACAATTTAATTTCTGGTTGAGAAAAGCCTTCTATTTAAGAAATTTACAAAGCTATATGTCTCAAGATTCACCCTTAAATTTACTTAAGGAAAAAAATAATTGACACTAGTAAGTTTTTTTATGTCAATCAGCAAACTGAAAAAAAAAAAAGGGTTTCAAAGTGCAAAAACAAAATCTGATGTTCATAATATATTTAAATATTTACCAAAAATTTGAGAACACAGGGCTGGGCGCAGTGGCTCACACCTATAATCCCAGTACATTGGTAGGCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGACAACATGGTGAAACCCTGTCTCTACTAAATAATACAAAAATTAGCCAGGCGTGCTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGGAGAATTGCTTGCACCAGGGAGGTAGAGGTTGCAGTGAGCCAAGATCGCACCACTGCACTCCAGCCGGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAATTTGAGAACACAGCTTTATACTCGGGACTACAAAACCATAAACTCCTGGAGTTTTAACTCCTTTTGAAATTTTCATAGTACAATTAATACTAATGAACATTTGTGTAAAGCTTTATAATTTAAAGGCAATTTCTCATATATTCTTTTCTGAATCATTTGCAAGGAAGTTCAGAGTCCAGTCTGTAACTAGCATCTACTATATGTCTGTCTTCACCTTACAGTGTTCTACCATTATTTTTTCTTTATTCCATTTCAAAATCTAATTTATTTTACCCCAACTTCTCCCCACCACTTGACGTAGTTTTAGAACACACAGGTGTTGCTACATATTTGGAGTCAATGATGGACTCTGGCAAAGTCAAGGCTCTGTTTTATTTCCACCAAGGTGCACTTTTCCAACAACTATTTAACTAGTTAAGAACCTCCCTATCTTAGAACTGTATCTACTTTATATTTAAGAAGGTTTTATGAATTCAACAACGGTATCATGGCCTTGTATCAAGTTGAAAAACAACTGAAAATAAGAAAATTTCACAGCCTCGAAAGACAACAACAAGTTTCTAGGATATCTCAATGACAAGAGTGATGGATACTTAGGTAGGGAAACGCTAATGCAGGAAAAACTGGCAACAACACAATTTATATCAATTCTCTTTGTAGGCAGGTGATAAAAAATTCAAGGACAAATCTCATTATGTCATTGTGCATCATATATAATCTCTTATGAGCGAGAATGGGGGGAATTTGTGTTTTTACTTTACACTTCAATTCCTTACACGGTATTTCAAACAAACAGTTTTGCTGAGAGGAGCTTTTGTCTCTCCTTAAGAAAATGTTTATAAAGCTGAAAGGAAATCAAACAGTAATCTTAAAAATGAAAACAAAACAACCCAACAACCTAGATAACTACAGTGATCAGGGAGCACAGTTCAACTCCTTGTTATGTTTTAGTCATATGGCCTACTCAAACAGCTAAATAACAACACCAGTGGCAGATAAAAATCACCATTTATCTTTCAGCTATTAATCTTTTGAATGAATAAACTGTGACAAACAAATTAACATTTTTGAACATGAAAGGCAACTTCTGCACAATCCTGTATCCAAGCAAACTTTAAATTATCCACTTAATTATTACTTAATCTTAAAAAAAATTAGAACCCAGAACTTTTCAATGAAGCATTTGAAAGTTGAAGTGGAATTTAGGAAAGCCATAAAAATATAAATACTGTTATCACAGCACCAGCAAGCCATAATCTTTATACCTATCAGTTCTATTTCTATTAACAGTAAAAACATTAAGCAAGATATAAGACTACCTGCCCAAGAATTCAGTCTTTTTTCATTTTTGTTTTTCTCAGTTCTGAGGATGTTAATCGTCAAATTTTCTTTGGACTGCATTCCTCACTACTTTTTGCACAATGGTCTCACGTTCTCACATTTGTTCTCGCGAATAAATTGATAAAAGGTGTTAAGTTCTGTGAATGTCTTTTTAATTATGGGCATAATTGTGCTTGACTGGATAAAAACTTAAGTCCACCCTTATGTTTATAATAATTTCTTGAGAACAGCAAACTGCATTTACCATCGTAAAACAACATCTGACTTACGGGAGCTGCAGGGAAGTGGTGAGACAGTTCGAACGGCTCCTCAGAAATCCAGTGACCCAATTCTAAAGACCATAGCACCTGCAAGTGACACAACAAGCAGATTTATTATACATTTATTAGCCTTAGCAGGCAATAAACCAAGAATCACTTTGAAGACACAGCAAAAAGTGATACACTCCGCAGATCTGAAATAGATGTGTTCTCAGACAACAAAGTCCCTTCAGAATCTTCATGTTGCATAAATGTTATGAATATTAATAAAAAGTTGATTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091879-ANGPT2:NM_001147:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)