MmuINT0015007 @ mm9
Intron Retention
Gene
ENSMUSG00000031465 | Angpt2
Description
angiopoietin 2 [Source:MGI Symbol;Acc:MGI:1202890]
Coordinates
chr8:18691337-18694527:-
Coord C1 exon
chr8:18694397-18694527
Coord A exon
chr8:18692209-18694396
Coord C2 exon
chr8:18691337-18692208
Length
2188 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTGTGTTTCGCTTTCACAGGCT
3' ss Score
10.79
Exon sequences
Seq C1 exon
GATTCACCTTACAGGACTCACGGGGACCGCGGGCAAAATAAGTAGCATCAGCCAACCAGGAAGTGATTTTAGCACAAAGGATTCGGACAATGACAAATGCATCTGCAAGTGTTCCCAGATGCTCTCAGGAG
Seq A exon
GTAAGGCGACTCTTCCTATTTGAATTGGCAAGAAGCAGCTGCCTAGCATAGACGACTGGCAGTGTAAGCTCCGACTGGAATGCATGCCTGACAATGAACAGCCTTACTTCCGTAAGAACACAAGCCATCTGCCTCCCAGTTCATTGGTTGGGCCTCCTTTTAGTTCAAGTGTGACATGAAAGCACAGCATGGAGCTGGAATTGTCACAAGGGTGACAGTGTACTCTCAGGATGCTTGGGAGTGAGCGAGGGGACATTAAGTGGCTCACTGACCAGATGAAAAGAGAAGGGTTTGGCTCCATACTGCTTTGTTTCTGTTTAATATCCAGCCCAGGGCTTTTCAGCTGTCTCTTTCATGCAATGATGCTTACATATAGCAAGAAAGTGGGCTGGGGAAGACAGCTCAGTGGGTAAGGTGCCTGCCATGTGCATGTTCAGGTCTGTAGCACTCTTGTACAAAGGTTGAATATGTGGTGTGCAACAATTCCAGTGCTGGGGCTGGCTTGCCTGTCAGTCTAGCTGAATCCATGAGTTCAAGGTTTGATGAGACTCTATCTCAAACCTGTGAGATGGCTCTGTGGGTAAACATGCTTGCCGTCAAGCCAGACATCTGAGTTTGATCCCTGGGTTCCTCATGGCCAAATGTGAGAACTGCTCCTTGCAATTCTCTGATCTCCACACCAGAAATAAATAAAATTAATTAAATTATATGAATAAAAGCTTCTAAGACAAGTAAAAGATCTAAGCTTGAACAATGCCTGCTCTTCAGTAAAGAATTCGTGCAGCAACAGTAACAAGAGGATATATTCATGAAATGAAATTTAGAAATTGAGATTTCATGAAAGAATTAGGTCCCACTCTCTGGCAGATCCTGGATTCTTGGGGTAGCAGATTGGCCACTTGGTGGCATGAGTTTTCTCTATTAGCTGTAATTATTCAAAGGAGAGAACCCCAGTGAACTGCTGTAAAGGGGGCTGGACTCTCATCTCACTGTAACAGCTGTCTTTAAAGCCACATAACAGCCGGGGTAGGGGTAGGTTCTGGGGCCACAGCACCCCTGATCCCGAGCCGGCTTGCTGTTCGTTCCCACACTTAGACCTCTCTGGAGAGGCTGACTGTTCTCAGACCACCCGTGTGCTGCTATTCCAGAGAGCAGGAGAGCTGCTTCCCAACCAAGGACACAATTCATTTATTTACCCAGCTCAAGATTTAAGGGCTGAGAATGGAGCTGGGAGAGACTTGGGAGGAGGCAAGCAGCCAGGGGAGGGAAAGTGGGGAGGTCTGGCTTGTAAGAGGCCAAGTTCCAAGCCATGGGCTGGCCCATAGGGAAGGTGGCCCGTGAAAAAGTGCACAGGAGCAATGACTCCAATGGTGCCCAAAGGCTAAGGCAGATCTGTAACTGACATTTCTCTCCAGCCCTAGGGTTTTACACAACACAGGCTCTTTTTATACATTCCCATTTCTCAGAATCAACAGCTAGGGGTGTCTCCAAGTGGTAGTGCCCAGGTGGCCTCAGAATTGGTGTTTCACCCACATTCTTTACTGTCTACTCGTTGTTGTTTTCTGGATTTAAAAAGAAACAAATACTATACAACCAGTGTCTCTCCCACTTGAGGCTTAAAGATAAATTCAGATTAGTACATTGTCTAGGTTTCTCCTTCATATGGTGAATCCCACTGCCTGCCATGCTCCTATTTGTGGGTAGACTCCGGAGCTACAACGGGAAAGATCCTTACTGCTGCCTGACTCTCCCTCAGTACCACACTTTGTAGTGTTAAGGTTCCTTTTTCCCTAGCTCCCCAGAGAGCTAGACACACTTGGCTTCTGTTCCAAACAAATATACATGATGGAGGGGGATGGGAACCACTTGGCCCACCTTCTACCCACATCTGCCAGCAGTCTCACCATGTCTTCACCCCACAATGCACTGTGGATGATAGCTTTTCACACAGCACTGACCGACATTTCTTCATGTAGCAAGGGTTCTGCACAAAGCAGCTAGGGCATGTGTAAGAACTCATGCTACCACAGTACTGGGATTGCACTGGTGTGCAGTCTGTGTTTATGGAGTAACAAATCAATGTGGCTCTTTCCACACCATGGGGTGTGTGTGTGTGTGTGCCCAGCTAAGTCCTGCAGACAAGCTGCAGCTACCCAGTCCTAATTGCTTCTGTGTTTCGCTTTCACAG
Seq C2 exon
GCTGGTGGTTTGACGCATGTGGTCCTTCCAACTTGAATGGACAGTACTACCCACAAAAACAGAATACAAATAAGTTTAACGGTATCAAGTGGTACTACTGGAAGGGGTCCGGCTACTCGCTCAAGGCCACAACCATGATGATCCGGCCAGCAGATTTCTAAATGCCTGCCTACACTACCAGAAGAACTTGCTGCATCCAAAGATTAACTCCAAGGCACTGAGAGACACCAATGCATAGCAGCCCCTTTCCACATCAGGAAGTGCTCCTGGGGGTGGGGAGGGTCTGTGTGTACCAGACTGAAGCGCATCACTTAAGCCTGCACCGCTAACCAACCAAAGGCACTGCAGTCTGGAGAAACACTTCTGGGAAGGTTGTGGCTGAGGATCAGAAGGACAGCGTGCAGACTCTGTCACAGGGAAGAATGTTCCGTGGGAGTTCAGCAGTAAATAACTGGAAAACAGAACACTTAGATGGTGCAGATAAATCTTGGGACCACATTCCTCTAAGCACGGTTTCTAGAGTGAATACATTCACAGCTCGGCTGTCACAATGACAAGGCCGTGTCCTCGCACTGTGGCAGCCAGTATCCAGGGACTTCTAAGTGGTGGGCACAGGTTATCATCTGGAGAAGCACACATTCATTGTTTTCCTCTTGGGTGCTTTACATGTTCATTTGAAAACAACACATTTACCTATCTTGATGGCTTAGTTTTTAATGGCTGGCTACTATTTACTATATGGCAAAAATGCCCACATCTCTGGAATAACCACCAAATAAGCGCCATGTTGGTGAATGCGGAGACTGTACTATTTTGTTTTCTTCCTGGCTGTTAAATATGAAGGTATTTTTAGTAATTAAATATAAGTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031465-Angpt2:NM_007426:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: