GgaINT1006109 @ galGal4
Intron Retention
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10243350-10245306:+
Coord C1 exon
chr20:10243350-10243480
Coord A exon
chr20:10243481-10243554
Coord C2 exon
chr20:10243555-10245306
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCTCCTGCTCCCTCCCATAGGGT
3' ss Score
12.64
Exon sequences
Seq C1 exon
GCTCTCACTGCAGGACTACAGCGGCACGGCCGGGCAGCAGAGCGGCTTGGCCATGCAAGGCACCAACTTCAGCACCCGCGATGCTGACAACGACAACTGCCTCTGCAAGTGTGCCCAGATGCTGTCAGGAG
Seq A exon
GTGAGCAGCGAGGTTTGGGCCGGGGTCCTCGCCCCGTGCCCGCCCCGGTGCCACCCTCCTGCTCCCTCCCATAG
Seq C2 exon
GGTGGTGGTTCGACGCCTGCGGGCTCTCCAACCTGAATGGCATCTACTACCCGGCGCGGCACAACATCCGCAAGCTGAACGGCATCCGCTGGCACTACTTCCAGGGGCCCAGCTACTCGCTGAAGGGCACCCGCATGCTGATACGGCCCGCGGGCTTTTAGCCATCCGGAGCGGTGCAGCGGGAGGACGGAGCCCCTGCAGAGCTTTCCCCCCTTATTTCCCTCTCGCTCTTGTTTCTCTCAGATCTCGGCGCTGACACTGAGCCAGCCCCACCCCTGCAAGCTGCAGCGCGTGGATCCCGTTCCCTCCTGGTTTCTCCCTATTTCCCCCATGTCTGCAGGGCTCCGGGCTCCACGCTGTGCCGGGGTGTGCGTCTGGGACCACCAGACCTCCTGCACGAGTCACGCGGGGGCAGACAGACCACATTTTGCCTTTTCTATACATTTTAGGGCACTGCCCTAAATTCCCCATTGCTTTGCTTTTCCTGCAGGATGAGCAGAACCGGTGCGTGAGCGCATGGCATCTCTCCTCCCTGCACGGTCATTAAGGGGGACACAGCTGTCCCCTCCCGCATGCACTCTCCCCATGCAAGGGGACCACTGGCTGTGCACATCCTGATGGGACAGGGACAGCATGAGGGGACGGAGGTGCCAGCAGAGGCGCGGGGCAGCTGGCCCCTGTGCAGTGCCCAATAGCTCTGGGGTTGGGTGCCAGAACACAGGGGTGGTGGGGATGGGGGCGGCACACGGTGATGGGGCTGTGGTTTGAGGTGGGGCACAGAGAGCTGAGGATGATGGAGGGAGCTTGGAGCTGGGGACGCAGGTGCTGGTGGGGCTGACAGCCCACTTGGTTTATCGGCGTGGAGAATCCAGACTTGGAGGCACATTTGGTGACAGCCTGAAGAATGTGGGACAAAACTCAGCAGTGTTTCCTTCTGCTGAGAAAAGCCCCCACGCCCACCCATGTCCTGGATCTTGGCATGGGAACTCTTATTTTTGTACTGAGAGATATTTATTGGCCAGGAGCTGCACCAGGCAGCACTCAGCCCTGCCCCGACAGCAGCACGGTGCCCCCAGACCCACGCTGGCCCCACACCGGATCAGATGGGACAGAAGCAGAGTGAGCACCAGGGGGGTCTCCGCTTACAGGACAGCAGTGGGAGAATCACCCCAGGGTACCTGCATGGGGCTGAGACCCCCACGCACAGCTCCCACCTTTGCCAAGTGCTCTGGCAGTGGTGGGGATGGGAGCTGTGGCTGTGGGGTCGCTGCCGGGGACTGCAGCAGTGCTGCCTCAGCCCCACGTACACACTATGTATGTTCACATAAAGGACCTTTCAGCAGTCTCCCTGCTACGTCTGCATCATTCAGGGGGGTGCAGCCCCATCCTGCCCCCCTGAGCACTGACTGAGCTCAGAGCATAGATGAGGGCTCAGTGATGCCCAGCTCCACAGCGCTACCCATCTTACCGTGGGCCACCCCTGTCCCCCTCGACCCTATTGCCACTAGAGGTCCTCCACAGCCTGGTGACATTACACAGCATCCCCATCCACGGCAGACAGGAGCGACATTGTGCCCTGGTGGATCCCCAGCAGACCCTGCAGCACCCACCCCTCAGACACCCTGCAGGCCTGCTCCCTCCCCTCCCCCATTCATAAGGCATTTGCTAATTAACACTGATTAAAACATGTGATGCAGCTGGCACTTCCTCCAAGGTGCTCGTCAGACTGTGCTTAATAACTGAGAAGTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890:ENSGALT00000045797:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACTGCAGGACTACAGCG
R:
ATGCCATTCAGGTTGGAGAGC
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]