MmuINT0015015 @ mm9
Intron Retention
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151769040-151770390:+
Coord C1 exon
chr2:151769040-151769170
Coord A exon
chr2:151769171-151770229
Coord C2 exon
chr2:151770230-151770390
Length
1059 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTCCTCCCTCTTCCACTAGGGT
3' ss Score
12.47
Exon sequences
Seq C1 exon
CCTCTCTGTGAATGACAGCAGCAGTTCAGCAGGGCGCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGCACCAAAGACATGGACAATGATAACTGCATGTGTAAATGTGCTCAGATGCTGTCTGGAG
Seq A exon
GTGAGTTTATCATGATGAAACCTGTTGGTGGGTGTGTCCAGATGATATCTGGAGGTGAATGTGTTCTGATGCTGTCTGGAGGTGAGTGTATCCGATGATACCTGCTGGTGGGTGTGTCCAGATGATATCTGGAGGTGAGTGTATCTGATGATACCTGCTGGTGGGTGTGTCCAGATGATGTTGGAGGTGGGTGTATCTGACAATACCTGCTGGTGGGTGTGTCCAGATGATGTTGGAGGTGGGTGTGTCCAAATATTGTCTGGAGATGGGTGCTCCTGGTGAGACTCTAGCCAAACCTCCCTCTTTCTAGTCACTGGAGTTCCCACTGGGTTGTACTGGGAGATGGCAAGGGTAGCTCCAGGAAGGCATGATGTTCCCATCCATCCCACCCTCTTGTCTGAGGATTCTCCTACTCCCCAGGCCAGGAAGAAACATCATGAGAGAGACCAGAAGCAGGGAGGGCAGCTCCCCTGCCCACCTCTCTGTCAGGCGATACTCCTGGCAGGGAAAAGACCAGAGGCTGAAGATGGAATGGGAGCAGCACTGGTAAATGAGACCCAACTCACAGATACAGGGACCAGAAGAGGCAGTGACATAGGTGGCAGAGGCAGAGAGGTGCAGGTGACAGCAGACAGCAAGGAGAGGACTAAAGTCCAATAGGTGGGCTAGAAGTGTGCAGAACACACTGGAGACAGAGCCCCAGGGGAAGATAGGGCAACAGAGAGACATGACACAGACAGAGGACATGCAGAGGGACATCCACAAACACAGAGACCACTAGAGTGAACAGGAAGACATGGCAGAGCCTGGTAGGAGATCATCAAAGGAACAGGAAGAAGAGAGGGGTGTCAGAGGCACAGCAGGAAGTCACAAAGGGGCCTGCGGTGTGACTGGAACCTCTCCTACCCTCCAAAGCCCTGGCCCATACCCAACCCATACCCAGCCCACCACCTTCAGCAAATTGGCACCCCAAAATGACAGTCCATGAGCCTTATCCTCCCTGAATCTCGGCCACCAATCTCACCTCCTCCAAACCCTCTGTCCTCCCTCTTCCACTAG
Seq C2 exon
GGTGGTGGTTTGATGCCTGTGGCCTCTCCAACCTCAATGGCATCTACTATTCAGTTCATCAGCACTTGCACAAGATCAATGGCATCCGCTGGCACTACTTCCGAGGCCCCAGCTACTCACTGCACGGCACACGCATGATGCTGAGGCCAATGGGTGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460-Angpt4:NM_009641:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATGACAGCAGCAGTTCA
R:
CCCATTGGCCTCAGCATCATG
Band lengths:
279-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: