HsaINT1003630 @ hg38
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:869899-874414:-
Coord C1 exon
chr20:874284-874414
Coord A exon
chr20:873121-874283
Coord C2 exon
chr20:869899-873120
Length
1163 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGTCCTCCCTCTTCCACCAGGGT
3' ss Score
12.27
Exon sequences
Seq C1 exon
GCTTTCTGTGGTCGGGTACAGCGGCTCAGCAGGGCGCCAGAGCAGCCTGGTCCTGCAGAACACCAGCTTTAGCACCCTTGACTCAGACAACGACCACTGTCTCTGCAAGTGTGCCCAAGTGATGTCTGGAG
Seq A exon
GTAGGTGCAGGGTGGGGTGAAGCTCCGCCCACCCACAGGCTCACCCAGATTGACACTCCCATTCCCTCCCCAGGTTCTTGTGCGCCCAGGTGCTGTCAGGAGGATGGGTGCAGGTCTGGGCCTTGCCCACCCATAAGCTCACCTGGCTGTGCCCCTTCGGTGCCTTCCCCCATTGAGTCCTTGAAGTCCCCTCCAGGTCTCACCTCCTCCTAAAGCTGGCACCACCAGTTTTCCTCAGAGACAAGGCTAAAGAAACACTGAGTGCAGGGCCCCGGGGGGGAGGCACCCTATACCCTATCAGTCCCAACCCCAGGCAAGCCGAACCAGGATCAGGAGACCAGAGGGAGGCAGAGGGGCAGCTCCACACCAGCTGTGGCTCAGGCAGTGTTCCTTGGTAGGCACAGAGGTCAGAGAACAGGAAGTGGGGTGAATGGGAGACAGAGACAAAGTAAGAAGAACAGAGACAGGGGGAGAGACCTTCTGAGACACAGAGGACAGATGGAGAAAGAGAGAGACACCAAGGCTGTCAGAGTCATTGAGCAGCAGATGGAGAGCTATACTGGGGCAGAGAAGTACAGAGGGAGATGGGGGAGAAAGACTTAGCCCAAGGAGAGGCCGGGAGACAAACACAGCATGTGAAAGATGGGGGCCCAGAGGAAGGGAGGGCCAGAGACACGAAAGGCAGAGAGGGACAAAGACCATCAGAGAAAGATGAACACAATGGGACACACAGAGACAGACCCACGCACAGAGACCATAAGAGAGAAAGAGATGAACCTGGAGAGTGAGAGACTCAGAGAGAGTGACAGAGACCACTAGAAAGCAGTGAGCAGAGCGATGAGGGGAGGTTGGGGAGCTGGAAAGACAGGTTCAGTGAGGGAGGAAGACAGGGACGCCAAGGGCTCAGGGAGAAGGCCGGGAGGAGCAAGGGGGCTCGAGGAGTGGCCAGAGCCCCTTGCTGCCCTCTAGAGGCCCCGGCTGAGCAGAGGGTCTGTTGTCCACCCCACCCCCACTCCCACCCAGCCCCATCCCCAGCCAGCTGGCTTCCCAGAGGAGGCAACAGCCCCGATTAGTCTTTGTTCTCTTTGGGACACAGGGGCTGCCCTCTTGCCACTGGCTGGGCTCCCACCTCCACCAAGCGCCTGTCCTCCCTCTTCCACCAG
Seq C2 exon
GGTGGTGGTTTGACGCCTGTGGCCTGTCAAACCTCAACGGCGTCTACTACCACGCTCCCGACAACAAGTACAAGATGGACGGCATCCGCTGGCACTACTTCAAGGGCCCCAGCTACTCACTGCGTGCCTCTCGCATGATGATACGGCCTTTGGACATCTAACGAGCAGCTGTGCCAGAGGCTGGACCACACAGGAGAAGCTCGGACTTGGCACTCCTGGACAACCTGGACCCAGATGCAAGACACTGTGCCACCGCCTTCCCTGACACCCTGGGCTTCCTGAGCCAGCCCTCCTTGACCCAGAAGTCCAGAAGGGTCATCTGCCCCCCAACTCCCCTCCGTCTGTGACATGGAGGGTGTTCGGGGCCCATCCCTCTGATGTAGTCCTCGCCCCTCTTCTCTCCCTCCCCCTTCAGGGGCTCCCTGCCTGAGGGTCACAGTACCTTGAATGGGCTGAGAACAGACCAAACTTGATTCCCATGACCAATGGTGGGGTTGCAGGCAGGTGGGAATGTATTTGCACATCGGAAGCTGCCCAGATGGCCCAGGTTCTCTCCCTTGGATTGGCAAGAAGGCCATCTCCCATTCTAAGCTCCTGTTCCAAGATTTTCTAGTCTTGAGATGTCCTTGAACTTTCTTTTCAAGTCTGAAGGGGCTGCATCCACCCCTTAGTGGGTGGGTTAATCATTATTTCCCCTTCACACTTCACCACTTCTAGGTTCTAATGACCCTAGATCTCAGGGTCTTTAGACTTCACCACTTCTAGGCTTTACCACTTCACCACTTCTAGGCTCCAATGTTTGGAGCTCAGGGTCTTTAGGAGACCCAAAAGGACATGCTCCTTCACCTCCAGCATGTCCTAGAGGATGTGTCACAGGGAATAACTATGGCTTGTCTCTAAAAGTACCTATGAGCAATGAGAAAAGGAAACAGCAGGTTAAGTCAAAGTGAACAGGCACTCTTCACTGCAGGACTGATCAGAGCCTTTAATATGGCCAAGTGCCTTGTGACTACCCATGAAGGGGCTAGAGTGGGCAGCTTTCTCCAAATTTACTTATTTGAAAATGGGCTCGGTTTGTCCCAGAGCATCTCACAGGACTGTAGATGCTCTTGGACAAAGCTAGTGCTCCCCTGGCATAAGGAGGAGCCCTACGACCCCATCCCCACCCCAGCTATACTCACCCTTTTTGGCTACAAGGGCCACAGTGACAGCCTCAAACAACCTCTAAAAACAACTGGAAATAACCTTTCAGTTAAAACAGATACCATCCCTGAAGAAGGGTCTAGAACTAGGTCCCTGTCTGTGTTATAGGCTCATGTCCTCCAAGGCTCCTTCAAGTCCCAGGAAGCTGATCTCTACCTGGGTGGCTTCCCTTAGGACTCCCTGTAACCTCAACTCCCCCAGGCTCAATTACAGGGACTGTTAGGCAGGACATCTGTCTCCAAGTCCAGATCCTCTCTGCCTCCAAGCCCTAACCCCTAGCCTCCCTCCCTTCCCCATCCAGCAGTGATGCTGCCTCTGTGGTGGTAGGTGGGGAGCTGCAGGGGAGGAGATAAGGCCTCTGCCTGAGTTTGGGAGACCAGGGCCCTCATAGCTTCTTTCAGAGGATGGAGTCAGAAAGGATCCACAGCTACTCTGTCACCTGCCCCCATCACTGTGTCATGCTGTCTGCCCTGTTGTCATCAGCCAACACCCAGGCATAGCCAGGAGCCCACCTGCCCTACCGCCAGGATACACCTCTGTCCTCAGAAGGTTTTCTCCTGGATGAGACTGAGCCAATGGGAATGGGACCCCTTCATCCCCCTGGCTCGCCCCAGCCCTGAGTCCCACTCTCAGCCGATCCCTGAGTAAACCCAGCACAGACTGACTTTGATCTCATTCCTGGGAATTAGCACTCTTCCCCTTCAAGACTCAAAGGACATGGTTGCTAATGGTGGCATTTCAGGCATGATGGGAAATCTTTAGGGGCAGATTGCTGCCCAGAGAGCTCAAATCGCCTTAAGCAGCATTTGCCCAGCAGACCTTTATTTAGCCTCTACTGTGTGCAGTGTGGTGTGGTGGGCAGGGCTTTGGAGTCGGACAAACCTGCTCCAGCTCTGACACTTTGGTCCAGTGGCTCAGCCTCTCAAGGCACCAGTTATCTTCACATCATCAAAGCCTCAGTTTTCCCATCTGTAAAATGGAGATGATAATATTCCTTCCTGGCTGGGCTATGGCAAGGAGGAAATGAGACCATGTATGTCATCTTCTTAATAGAGCCTGGCATGAAGCAGGTGCCTAATAAATGTTTGTCCTCAAAGAGGAGAATGGGGTGAGGAAGGCATTCCCCAGCACATGCCGCCCCTTCTCCTGCACTCAGGTGAGGAAAAGGCATTTTATTTTTGTATCCACATCATTTATTTTTCTATTGTAGTTTCTAGGCTGACTGCAAGCTAGAGAGGAGACAGGGCAAAGCTGTGAGGCCCAGGGACAGAACTCCTCTGGGTGGGTTGAAGGCCCAAGTCCCTCTCTACTCCCATTTTATAAGGGGGCAGGAAGCTGATTTGAGTTATCCTCAGACACCTGTTCTTTATGTAATTTTATTTTATTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGATCACTGCAATCTCTGCCTCCTGGTTCAAGTGATTCTCCTACCTCAGCCTCCTGAGTAATGGGATTACAGACGCCTACCACCACGCCCGGAAAACTTTTGTATTTTTAGTAGAAACGGGTTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCCTCATGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATACCCAGCCTCAGACACCTGTTCTTAAATATTCATCCTTCTTTCTTACCTTCCTTCCTCTTCCATGCCAGGACTCAGGTATAAGGGATAGAAATTCTAGCCCTAAGGAATAAATTGACTCACATAACTGGAAAGTCTAAGGGTAAAGGCAAGTGAGGTTAGATCCAGAGGCTCAAATGATGTCAGCTCCACCTCTCAGCCCCTCCATCTGCCCCGTTGACTTCATTCTCAGCCAGGATCTTTCCTCACAAGAAGGCTCTGGCAGCCCCAGGCTCATGTCCTCCCAGCTCAGCATCCCTGACCCGGGGAGCTCCCTCGTCTCCATGATTCCAGTAAAGGAATGATTTTCTGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280:ENST00000381922:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTGTGGTCGGGTACAGC
R:
GTTGTCCAGGAGTGCCAAGTC
Band lengths:
354-1517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains