RnoINT0017312 @ rn6
Intron Retention
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147453618-147455670:+
Coord C1 exon
chr3:147453618-147453748
Coord A exon
chr3:147453749-147454835
Coord C2 exon
chr3:147454836-147455670
Length
1087 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTCCTCCCTCTTCCACTAGGGT
3' ss Score
12.47
Exon sequences
Seq C1 exon
CCTCTCTGTGAATGACAGCAGCATCTCAGCAAGGCTCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGTACCAAAGACATGGACAATGATAACTGCATGTGCAAATGTGCTCAGATGCTGTCTGGAG
Seq A exon
GTGAGGGTAGCAGGATGATGCCTGTTGGTGGGTGTGCTTTGATGATGTCAGGAGGTGGGTGTGTCCAGATGGTGTCTGGAGGTGGGTGTGTCCAGATGATGTCAGGAGGTGGGTGTGTCCAGATGGTGTCTGGAGGTGGGTGTGTCCAGATAGTGTCTGGAGTNNGTGGGTGTGTCCAGATGATGTCAGGAGGTGGGTGTGTCCAGATAGTGTCTGGAGGTGGGTGTGTCCAGATGATGTCTGGAGGTGGGTGTGTCCAAATATTGTTTGGATATGGGTGTTCCTGGTGAGACTCCAGCAAAACCTCCCTCTTCCTTGTCACTGGAGTCCCCGTGGGGTTGTACCTTCAATAGAAACACCATTAGATTTCCTTCAAGACCAGCTAGGAGATAGCAAGGGTAGCTCCAGGAAGGTTCGATGCCCATCAATCCCGCCTTCTTGTCTGCTGATTTTCCTACTCCCTAGGCCAGGTAGAAACATCATGGGAGAGACCAGAAGCAGGGAGGGTAGCTCCCTTGCCCATCTCTATGTCGGGCGGTGCTTCTGGCAGGGAAAAGGCCAGAGGCTGGAGATGGAATGGAAACAGCACTGATAGAAGAGACCCAAATCACAGAGACAGGGACACAAGGTGTCAGAGGCAGAGAGGTGCAGGTGACAACAGACAGCAAGGAGTGGACTAAAGCCCAAGAGATGGGCAGGAAGTGTGCAGAGCTCACTGGGGACAGAGCCCCCAGGGGAAGACAGAGCAGCAGAGAGACACATGACACAGAGGACGTGCAGAGGGACATCCACAAACACAGAGACCACTAGAGTGAACAGGAGGGAATGACAGAGCCTGGTAGGAAGTCATCAAGAGAAAAGAAGGGAGATAGGGGTGTCAGAGACACAGCAGCAAGTCACCAAGGGGCATGAGCTGTGACCAGAACCTCTGCTACCCTCCAAAGCCCTGGCTTTACCTCTGCCAATACCCAGCCCACCACTGTCAGCAAACTGGCACCCCAAAATCGCAATCCATCAGCCTTGTCCCTCCTGAATCTAGGCCAAGGCATCTCACCTCCTCCAAACTCTGTCCTCCCTCTTCCACTAG
Seq C2 exon
GGTGGTGGTTTGACGCCTGTGGCCTCTCCAACCTCAACGGCATCTACTATCCGGTTCATCAACACTTGCATAAGATCAATGGCATCCGCTGGCACTACTTCCGAGGCCCCAGCTACTCACTGCATGGCACACGCATGATGCTGCGGCCAATGGGTGCCTGACACACAGCCCTACAGAGACTGATGCTCAAGGAGGATTCTCAACCCAGATGGCTCTGTGCAAGCTGGATCCTGCCCAGAAGTCAGTGCCCAGGGCTCATCTTGACATTCCGGGACACCAGAACCAGCTTATCTTGCACCTGAATTATGAGAGTCACTTGCCTCCCTGTGCCCCTCTAGTGTGAAATGCTGGGTGCTTGAGGCACCTGCCTCTGTGGGACCCATGCTCCTGCTGCATGCAGGGGCTCCCTGTCACGGTCTGAGGCAGACTGAACTTGACTCAGAGGGAGGGGTTGCAGCAGGCGGGGAAAATCTTGCAGACTGGGGTGCCCTCCTCCAGGAGCGTCTGAGAGACGATCCTATCCCCCTTTTATAATTTCAAGTTTCTCTAGCCTTGAGTTGTCTGAAGACTTCCTTCCAAGGCTGGTGAACACTGTTCCCACTTCCAGCCCCCCAGGGCTAGCCATTATTTCCCAGGGCTCTGTGGCTCCTGGGCTTCAATGACTGACAGTCAGACCTGGTCTCTCGGAGGCTTCTAGAAATAGGAGAAGGGATCCTTTCACTCCAGTGTGCCGTAGAGTGTGTTCCGTAGGTACTAAGGCTCCTCTCTAAGGTACTTTGGATGAAGTAAGAGAGAAACAGCAGGTTAAATAAAGAGAATAGAGTTTCTTAACGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008:ENSRNOT00000006786:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTCAGCAAGGCTCAA
R:
CAGGATCCAGCTTGCACAGAG
Band lengths:
346-1433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]