HsaINT0007990 @ hg19
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:853297-855057:-
Coord C1 exon
chr20:854927-855057
Coord A exon
chr20:853764-854926
Coord C2 exon
chr20:853297-853763
Length
1163 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGTCCTCCCTCTTCCACCAGGGT
3' ss Score
12.27
Exon sequences
Seq C1 exon
GCTTTCTGTGGTCGGGTACAGCGGCTCAGCAGGGCGCCAGAGCAGCCTGGTCCTGCAGAACACCAGCTTTAGCACCCTTGACTCAGACAACGACCACTGTCTCTGCAAGTGTGCCCAAGTGATGTCTGGAG
Seq A exon
GTAGGTGCAGGGTGGGGTGAAGCTCCGCCCACCCACAGGCTCACCCAGATTGACACTCCCATTCCCTCCCCAGGTTCTTGTGCGCCCAGGTGCTGTCAGGAGGATGGGTGCAGGTCTGGGCCTTGCCCACCCATAAGCTCACCTGGCTGTGCCCCTTCGGTGCCTTCCCCCATTGAGTCCTTGAAGTCCCCTCCAGGTCTCACCTCCTCCTAAAGCTGGCACCACCAGTTTTCCTCAGAGACAAGGCTAAAGAAACACTGAGTGCAGGGCCCCGGGGGGGAGGCACCCTATACCCTATCAGTCCCAACCCCAGGCAAGCCGAACCAGGATCAGGAGACCAGAGGGAGGCAGAGGGGCAGCTCCACACCAGCTGTGGCTCAGGCAGTGTTCCTTGGTAGGCACAGAGGTCAGAGAACAGGAAGTGGGGTGAATGGGAGACAGAGACAAAGTAAGAAGAACAGAGACAGGGGGAGAGACCTTCTGAGACACAGAGGACAGATGGAGAAAGAGAGAGACACCAAGGCTGTCAGAGTCATTGAGCAGCAGATGGAGAGCTATACTGGGGCAGAGAAGTACAGAGGGAGATGGGGGAGAAAGACTTAGCCCAAGGAGAGGCCGGGAGACAAACACAGCATGTGAAAGATGGGGGCCCAGAGGAAGGGAGGGCCAGAGACACGAAAGGCAGAGAGGGACAAAGACCATCAGAGAAAGATGAACACAATGGGACACACAGAGACAGACCCACGCACAGAGACCATAAGAGAGAAAGAGATGAACCTGGAGAGTGAGAGACTCAGAGAGAGTGACAGAGACCACTAGAAAGCAGTGAGCAGAGCGATGAGGGGAGGTTGGGGAGCTGGAAAGACAGGTTCAGTGAGGGAGGAAGACAGGGACGCCAAGGGCTCAGGGAGAAGGCCGGGAGGAGCAAGGGGGCTCGAGGAGTGGCCAGAGCCCCTTGCTGCCCTCTAGAGGCCCCGGCTGAGCAGAGGGTCTGTTGTCCACCCCACCCCCACTCCCACCCAGCCCCATCCCCAGCCAGCTGGCTTCCCAGAGGAGGCAACAGCCCCGATTAGTCTTTGTTCTCTTTGGGACACAGGGGCTGCCCTCTTGCCACTGGCTGGGCTCCCACCTCCACCAAGCGCCTGTCCTCCCTCTTCCACCAG
Seq C2 exon
GGTGGTGGTTTGACGCCTGTGGCCTGTCAAACCTCAACGGCGTCTACTACCACGCTCCCGACAACAAGTACAAGATGGACGGCATCCGCTGGCACTACTTCAAGGGCCCCAGCTACTCACTGCGTGCCTCTCGCATGATGATACGGCCTTTGGACATCTAACGAGCAGCTGTGCCAGAGGCTGGACCACACAGGAGAAGCTCGGACTTGGCACTCCTGGACAACCTGGACCCAGATGCAAGACACTGTGCCACCGCCTTCCCTGACACCCTGGGCTTCCTGAGCCAGCCCTCCTTGACCCAGAAGTCCAGAAGGGTCATCTGCCCCCCAACTCCCCTCCGTCTGTGACATGGAGGGTGTTCGGGGCCCATCCCTCTGATGTAGTCCTCGCCCCTCTTCTCTCCCTCCCCCTTCAGGGGCTCCCTGCCTGAGGGTCACAGTACCTTGAATGGGCTGAGAACAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-ANGPT4:NM_015985:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTGTGGTCGGGTACAGC
R:
GTTGTCCAGGAGTGCCAAGTC
Band lengths:
354-1517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)