BtaINT0017847 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60771819-60773778:+
Coord C1 exon
chr13:60771819-60771949
Coord A exon
chr13:60771950-60772896
Coord C2 exon
chr13:60772897-60773778
Length
947 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTTTCTCTTGCCTCCACCAGGGT
3' ss Score
9.51
Exon sequences
Seq C1 exon
GCTTTCTCTGAGTGGGTACAGTGGCTCAGCAGGGCGCCAGAGCAGCCTGGTCCTCCAGGGCACCAACTTCAGCACGCGCGACGCAGACAATGACAACTGCCTCTGCAAGTGCGCCCAGATGCTGTCCGGAG
Seq A exon
GTGGGTGCAAGATGGGGTGGACCCACGCCTCTGCACAGGCTCACCTGGCTGAACACCTTTATCGCCTCCCCACTTGGGTCTTTGTGCAGCCAGGTGCCATCAAGAAGTGGGTACAAGTCAGGGTCTCACTCACTTGCAGGCTGGCCTGGCTGTACCTCATCCAAACTTCCCTACTTCCACTGAGTCCTTAAGGTCCCCTCCAGGGTCTCACCGCCCCCTAAAGCTGGCACCTCCAGTTCTCCCCTGAGACCTCAGAGCAGCACTGATGCTGGGGACCAGGGTGCACCCTAGGGGGGTAAAATGCCTAATCTGCTCCAACCCCAGATTTGAGACTCCCCCGCAACCCTCCTCCAGGCCAAGCAGGATCAGGAGGAGGGAGACCTGGGTTGGGGGCAGAGGGGCAGCTGCCCACCAACTCTGACTCAGGCAGTGTTTTCTGCAGAGAGCGATGTCAGAGAGTGGGAGATGGGATGTGAGAGACAGAATGAGAGGGACAGAGATCAGAGGGGACCTCAGGAGACACAGAGACAGGGACAGACTGAAATGAGAGAAACACCAGGATGAACAGACAGAGAGGTGGACACAGAGCTGCATGGGGACAGGGGCAGGTACAGAGGGAAAGATGGAGAGAGAATCACAGATCACGTTTCATCCACGAAAGACGGATGGAAACGGGGTGAGAGGCAGAGAGACCCAGAAAGGCAGGGTCATAGGGAGCAAAGAGACAGAGACATCAGAGAGATAGACCCAAGCTCCCAGCCTCTGGAGGCCCCAGGCTGAGGAGAGGGTCTGGGAATCTCCCACCCATTCCCACCCAACCCCATCCTCAGCAAGCTGGCTTCTCTCAGGGGCCAGCAGCCCTGATTCACCTTTGGGGTAGGGGGCTGCCCTCACCCTATTAACTGCATCCCCACTTACCTAAAGCCTCTTTCTCTTGCCTCCACCAG
Seq C2 exon
GGTGGTGGTTTGACGCCTGTGGCCTCTCAAACCTCAATGGCATCTACTATCCAGCCCGTCACCATGTGCGCAAGCTCAACGGCATCCGCTGGCACTACTTCCAGGGCCCCAGCTACTCGCTGCGCACCACTCGCATGATGGTGCGCCCCTCGGGCATCTAAGGGGCAGCCACGCCTGGAGGCTGGTCCCAAGGGAGGACATGGCCATGGTATCCCCTGGACAAGCTGGACTCGAACACAGGACACAATGCCAGGACCTTGTCCCGGACAGCCTGGGGGTCCCCTGAGCCAGCCCTCCTTGCCCCAGGAGTCCAGAAGAGTCGCCTCTAGCCCTTTTCCCCTCAAGTTGTGAAATGGTGGACATTTGGGGGTTCCTGCCTCTTCAGTGTCCCTCTTCCTCTTCCCTCCTGCCTCCTGCAGGGGCCTCCTGCCCACCTGAGGGCTGCAGTATCCTGAACAAGCGGAGAGCAGATTTAACTGGGCTCTGCAAAGGAATATGCAGCTAGTGGTGGAATTTCAGGCAAGTGGGAAGGTATTTACAGGAGGAAACCACTCAGGTGGAGGCCCAGATTCTGTCCCCAGGTTGTTGGGAAGGCCATCTCTTATTTCAAGCTTTCTCACATCCTTGAACTTTCTGTTCAAGACTGAAGGAGCTGTGTCCCCCCTATAATGGGAATCGCCATTTGCACCCACACTGTCCATCACTCCTAGGCCCCAGCATCTAAAGCTCAGACATGGTTTCTCAGGGGCTCCAGGAGATCCAAGAGGTACTCCTTTACCCCTAGAATGTTCTAGAATATGTTCCAGAGAGAATAAAGGTACCTGTGGTCTAATGAGGGAGGGAAACACCAGGTTAAATCAATGTAGACGCATTGTCAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811:ENSBTAT00000029073:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGTGGGTACAGTGGCTC
R:
TCCAGCTTGTCCAGGGGATAC
Band lengths:
354-1301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development