RnoINT0017304 @ rn6
Intron Retention
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:76013908-76016195:+
Coord C1 exon
chr16:76013908-76014038
Coord A exon
chr16:76014039-76015281
Coord C2 exon
chr16:76015282-76016195
Length
1243 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTTGTGTTTCGATTTCACAGGCT
3' ss Score
9.06
Exon sequences
Seq C1 exon
GATTCACCTTACAGGACTCACAGGCACGGCGGGCAAAATCAGTAGCATCAGCCAACCAGGAAGTGATTTTAGCACAAAGGATTCGGACAATGACAAATGCATCTGCAAGTGTTCCCAGATGCTCACAGGAG
Seq A exon
GTAAGCATCCTATTTGTAATGGCGACTGTGAACATGGGAGGCTGGCGGTGTGGAGCTCAGGCTGGGAAGGGTGACTGACAGTGGCCTTACCTCCATAAGAAGACACGCCATCTGCACACCAGCACGTTGTTGGGCTGCCTTTCAGCTCACGTGTGAAGTGAGAACACAACACGGAGCTGGACTTGTCACTGGGGTGACAGTATACTCTCAGGATGCTTGGGAGTGACCGGGGGACATGAAGTGGGCTTCCTGACCAGATCAAAGGCGAAGGGTTTAGCTCCATCTTGCTTTGCTTCTGTTTAACACCCAGACAAGGACTTAGCTGCCTCTTTTCTTGAAATGATTCGTTTACATAGCAAGAAAGTGGGCTGGGAAGGCAGCTCGGTGGAGTTGGGAGAGACTTGGGAGGAGGCAAGCAGCCAGGGGAGGGAAAGCGGGGAGGTCTGGGTTGAAAGAGGCCAAGTTCCAAGCCATGGGTTGGCCCATTGGGAAGGTGGCCTGTGGGGATGTGCACAGGAGCAGTGCCCGGGGTTCAATAGGTTTTTAAAAGAAGCTACCCTATTAACACCGTGTCTCTAAGGAAGCCTCAGAATTGGTGTTTCACCCCCATTCCTTACTGTCTACTCTCATTGTTTTCTGTATTTTAAAAGAAACATAAATATTATCATACAACCAGTCTCTCCCACACGAAGCTTAAAGATGAACTTGGATTAGTACGTTGTCTAGGTTTCTGCTTCATATGGTGAATCCTATGGCCTGCCATACTCCCACCTGTCGGTGGGAAGATGCTTACTGTTGCCTGACTCTCCCTCAGTACCAACTTTATAGTGTTAAGGCTCCGTTTCCCCCAGCTTCACAGAGCATAGGCACTTGGTTTCTACTCCATCCAAAGCAACATGACGGGGGAAATGGGAACCACTTGGCCTGCCTTGCTGTTAAGACTTCCACCCACATCTGCGGGCAGCCTCTCACGTCTTCACCCCGCAGTGTACCGCAGATGACAGCTCTTCACACAGCACTGACTGACGCTTCTTCACGTAGCAAGGGTTCTGCACAAAAGCAGCTAGACATGCGTAAGAACTCAGGTTACAATGGCACTGTGATCACCTTGGTGTGTAGTTTGTGTCTATGGAATAACAAATCAATGTGGCTTTTCCCACATCATGGGGGTGTGTGTGCCCAGCTGAGCCCTGTGGACTAGCGATTACCCAGTCCTGACTGCATTTGTGTTTCGATTTCACAG
Seq C2 exon
GCTGGTGGTTCGACGCATGTGGTCCTTCCAACTTGAATGGACAGTACTACCCACAAAAGCAGAATACGAATAAGTTCAACGGTATCAAGTGGTACTACTGGAAGGGGTCCGGTTACTCGCTCAAGGCCACGACCATGATGATCCGGCCAGCAGATTTCTAAATGCCTGCCTACATTATCAGAAGAACTTGCTGCATCCAAAGATTAACTCTGAGGCACTGAGAGACACCAATGCACAGTAGCCCCTTCCCACATCAGGAGGTGCTCCTGGGGGCGGGGGAGGATCTGTGTGTTCCAGACTGACGCACATCACTTAGGCCTGCACCGCTAACCAACCAAAGGAGACCCAAAGGCACTGCGGGTCTGGAGAAATACCTATGAGAAGGCCATGGTTAGAATCACAGGGACAGCATGCATTCGGACTCTGTCACAAGCAAGAATGTTACGTGGGAGTTCATCAGTAAATAACTGGAAAACAGAACCCTCAGATGGTGCAGATAAATCCCGGGACCACATTACTCGGAGCACGTTTCTACAGTGTACACAGACACAGCTCAGCTGTCCTGGAACCACAGCAGTCAGTCTCCAGGGACTTCTAAGTAGTGGTTACAGGTTATCATCTGGATAAGCACAGTTCGTTGTTCCGTCTTGTGCTTGACATCATTTGGAAACAACACATTTACCTATCTGACGGCTTAGTTTTTAATGGCTGGACACTATTACTATACGGCAAAAATGCCTACATCTCTGGAGTAGCCACCAAGCGGGCGCCATGTCAGTGCATGTGGAGACTGTACTGTTTTTGTTTTCTTTCTGGCTGTTAAATATGAAGGTATTTTTAGTAATTAAATATAAGTTATTAGCTGAGGTGATTATGTTTAATTTTTATGGTAATATATACAATTTTGCTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696:ENSRNOT00000022774:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGCAAGTGTTCCCAGA
R:
ATGTGCGTCAGTCTGGAACAC
Band lengths:
342-1585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]