HsaINT0008127 @ hg19
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61840295-61842495:-
Coord C1 exon
chr10:61842373-61842495
Coord A exon
chr10:61840377-61842372
Coord C2 exon
chr10:61840295-61840376
Length
1996 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTTTTTTTTTCCTTTTCAGATT
3' ss Score
14.12
Exon sequences
Seq C1 exon
ATTAGAGACACCAGCCAAGAGCCCTGTGGTCGTCTGTCTTTTCTGAAAGAACCAAAGACAACAAAAGGACTGCCTCAAACAGCGGTTTGCAACTTAAATATCACTCTGCCAGCACATAAAAAG
Seq A exon
GTATCTTTTAATACTGCTTTAAATTGTCTTTCCCTGGTCTTGAAGAAGTGGGCCTTTGGTATGCAATTAAGGAATGCTTTGTAACATGAATAAAGCTCTTGAAACTGAAGTTGTATTAGTCTCCTCGTGTAGATTGCCTAAGTCTTGTTAATGTGGTGTCAAATTCTTATAGTTTGTATGATGGAGTCTTCTCTGTTTATCGCTTTTGCTTCTGCTGGTAGCGCATAGATTTTTATGCTTTTAAATAACGTCATATGTTAATTTGCCATGGATGTACAGTTCTTGATATTTTTTGTTGGCTTTTTTTAAAATTTGCTTTGCTTTCTAAATCAGCTTGCATTTGTGCTCCCTACTCAGTCCTTTTCATATCCTGATATTCTTTTCCCTGCTGTCCATTATAATATTCCTTGTCTCTGCAATGCATCTTGGAACCAAAAGGAGACAGAGTCAGATCAAGATGATGAGGTAATATAAACACTTCTGCTTTTATTCTATCAGAAGTAGAATAGAAATTGAATCTGTATGACAGAAGTTGCAGAGGGCTAAAGTGTGGGAAACATATAAATTATATTTTTCAGGTCTTAAGTAGGTAAAAGGGTATATATTTTTCTTAAATGGTTCACTCTTCTTCCACACGTACTTAAGAGTACTTAAATATATTCAACGAAATTATAATTCAGCTGATGATTCAGAAACTGAAGGTCTTTAAACATTTTTAAATATGGTAGATTGGCATGTATAAATAAACGTTAAAAATTTTTTTAGACAAGTCAAGTGCAATAGTGAGAAAGGGGGAAAAGAGTAGGACCAGGAAGTTCTATCTATGACTGACGAGAACAGTCAACTGAGATAACGCACTACCTTCGAACCCGCCAAATAGACATTTTGTGAAAGTTTCATGTGCCTATTTTACTATCAACTATATCCTACTATCCAGCATGTTATAACATTTAAATCAAGATCACGTTTAATATGTGCAATTTTATTGTACAAATAAACTTATGTTGTATGTGATACAAAATATTTGCTTACTAGCTATTGATAAATCTTTGATACTCTCACTAAAGAAATTTATCTTGACCATTTTTTTAAGAATATAGTTCAATTAAGTTGTCTCCTAATGTTTCTCTAAGTTATATGATAATTAGGTTTTTGAATCCCACACATCAATAGTAATAAATAGAATCAAGTAGCCTTAGGATGCAGTAATAGTACCTCTGGCCAGGCGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGGATGGGGTGGGGGAATCACCTGAGGTCAGGAGTTCGACACCAGCCTAGCCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGACGTGGTGCTGCATGCCTGTAATCCCATCTACTCAGGAGGCTGAGGCAGAATTGCTTGATCCCAGGAGGCAGAGGTTGCAGTGAGGCGGGATCTCACCACTGTACTCCAGCCTGGGCTACAAGAGCAAGACTCCGTCCCTACCCTCCTCTGCCCGCCCCACCAAAAAAAAAGTACTTCTAACAAAACCATTCATCTGTTTTCAATCTCCTCATCTACACTTTATGCCTGTTAACATACAGAATCCCCAGCAGTAATTGGAATAATAAACTTTGTGTGCCTTTCTCCCTTGAATGTACTCACATAGAGTGAGTGTACTTTGTGATATATGTGCTTTCAATATGAACAGTTCCAGGAAAATTTAATGCTCAGCATCAGAAGTCTCTGTAATGCTTGTCTTTTACTTGTACTTCCCTGTAGTCTGCTGTGTTGGTGCTCTTAAATTTGCCAAATGATGATTTTGGTTAAGACATGGGGGGTGGGGTTACAAAATCCCAGTGGGAAATTAACATTTCCTAAGAAGGAAAATAAACAAGTTATCAACATGCCATCCTACAAAATGTCTTAAAACTGAAGATGTCACAGGGAAGTTGGAAATAGAGTTGTCTTTTTTTTTTTCCTTTTCAG
Seq C2 exon
ATTGAGAAAACAGATAGACGACAGAGCTTCGCATCCTTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-ANK3:NM_001149:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGACACCAGCCAAGAGCC
R:
TCCAGGCTCAGTCAAGTAGCT
Band lengths:
199-2195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)