MmuINT0015127 @ mm9
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69443020-69444945:+
Coord C1 exon
chr10:69443020-69443142
Coord A exon
chr10:69443143-69444863
Coord C2 exon
chr10:69444864-69444945
Length
1721 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TGTCTTCTCTTCTCTTTCAGGCT
3' ss Score
12.99
Exon sequences
Seq C1 exon
ATCAGAGACACCAGTCAAGAGCCCTGTGGCCGCCTGTCTTTCCTGAAGGAGCCAAAGACAACAAAGGGATTACCCCAAACAGCTGTTTGCAACTTAAATATTACTCTGCCGGCACATAAAAAG
Seq A exon
GTATCTTTTAAAACTGGTTTGTTTCCACTTTTCCCCTACCCCTGATCTCGGGGCAGTGGGCCGTTGGTATGTAATTAAGGAATGCTTTGTGACACTCCAAAAGCCTCCAAGTCGTGTTAGTCTCTGTGTGTAGTTGATGTCCTGTTGCTACGGTGTCCTGTTCCTACGAGTCTGTATGATGGCATTCTCTGTGGATTGCTTCCGCTGGTAGTCCGTAGATCTTTATGCTTCCGAATGATTGTCACGCATTAATCTGCCTTGGGTGTATGGTTCGCGATGCTGTTTTTATTGGCTTCTCTTGCTTTGCTTTGCTCTCTAAATCAGCTTGCCTTGTGTGCTCCTACTCAGTCCTTCTCATATCCTGACACTGTTTTCCCTGCTGTCCATTATAATATTCCTTGTCTCTGCAATGCATCTTGGGACCAAAAGGAGACAGAGTCAGATCAAGATGATGAGGTAATATGAAAACTTCTGCTCTTATTCTATCCAAGGTAGACTAGATATCGGATATGCGTGGAAAAGCTTGCAGCGGGCTCAGGTGTGGGAACAGCCTAAATGATCTTGTGCCTCTTAGCCGATCCTGAGGTAGAGTTAGCTTTCTTTAACGGGGCTCACTCTTCCTCGCTGTGCATGTAGGGGTGCTTCAGCGCATTCTGCAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATACAATAATAATAATGATAGCCAGTAAAAAGACCTGGAACCGCTAAAGCATTTTTAAACATGTCAGATCGCCATGCATCAACTTAATATTAAGTTTCCTGGGGCATATTTCACTACCCACTGCCATCTGGCTGTTATGCTGTCACTTGTAACTCAAGACCTTGGTTATCATATGGAATTGTGTTGCACAAATCAACTATGTCTTATGTATGCAAAAATATTTTCTAACCAACTGTGGATAGACATTTTGCCAGTCCAGCTAAATAATTTATCTTGGCCATTTTTAAGAAAAAGATTTTCTTTTTTAAATTATGTGTATATGTGTTTATGTGTGGGTGTGCGGACATGAGTACAGTGCCTGTGGAAGCCAGGAGAGGATATTTCACACACACACACACACACACACACACACAAGATTGTAAGCTGATTGATGTGGGTGTGGGACCCAAGCTCAGGTCCTTTGCAAGATCAGTATGCGCACTTAACCTCTGCCCCAGGGATCCAGCCCTGTCTTGACCATTTTCTTTAAAACAGTACCATTGTTCAGTTTTGTAAGAGATTTTCCTGTTATCTCCATGTATTCCTGTAAGCTATTGATATTCAGATTTTTTAAAAGCCCATGTCCCAATAATAACGGCCGTCCACCTGTTTTGAGGCTCCTCATCTCTGCTACGTGCCTGTCACCAGTACCCACGATGGCTATCGGAATGATGCTTTCTGTACCTTGTAGTGAGCGTGCTCTGTGATATGTGTGTGTGTTTTCAAGATAACGAACTGGGGGAGGCGAGGACGCTCACCGTTCACCCTTTGTAGTCCTCTGTAGTCTGCTGTGGGGGCGTGCCTTTATCTGCTGAGGCGCAGTCATGTGGTTGAGAGTTCAGGGCGGGGCTCGTAGAATCCCCAGGGGAAACGGAGTGCCTAAGGCTGAGCGAGCCATGACCATCCCATCCAGGGAAATGTTTCAGGGTGCGAGGTGTCGTGGAGAAGGTGGAAACGGTGTCTTCTCTTCTCTTTCAG
Seq C2 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTTGCCTCCCTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAACCCAGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-Ank3:NM_009670:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCAGTCAAGAGCCCTGT
R:
TCATGCTGGGTTCAGTCAAGT
Band lengths:
199-1920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: