HsaINT1003657 @ hg38
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60080537-60082176:-
Coord C1 exon
chr10:60082150-60082176
Coord A exon
chr10:60080619-60082149
Coord C2 exon
chr10:60080537-60080618
Length
1531 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TTTTTTTTTTTCCTTTTCAGATT
3' ss Score
14.12
Exon sequences
Seq C1 exon
GAGACAGAGTCAGATCAAGATGATGAG
Seq A exon
GTAATATAAACACTTCTGCTTTTATTCTATCAGAAGTAGAATAGAAATTGAATCTGTATGACAGAAGTTGCAGAGGGCTAAAGTGTGGGAAACATATAAATTATATTTTTCAGGTCTTAAGTAGGTAAAAGGGTATATATTTTTCTTAAATGGTTCACTCTTCTTCCACACGTACTTAAGAGTACTTAAATATATTCAACGAAATTATAATTCAGCTGATGATTCAGAAACTGAAGGTCTTTAAACATTTTTAAATATGGTAGATTGGCATGTATAAATAAACGTTAAAAATTTTTTTAGACAAGTCAAGTGCAATAGTGAGAAAGGGGGAAAAGAGTAGGACCAGGAAGTTCTATCTATGACTGACGAGAACAGTCAACTGAGATAACGCACTACCTTCGAACCCGCCAAATAGACATTTTGTGAAAGTTTCATGTGCCTATTTTACTATCAACTATATCCTACTATCCAGCATGTTATAACATTTAAATCAAGATCACGTTTAATATGTGCAATTTTATTGTACAAATAAACTTATGTTGTATGTGATACAAAATATTTGCTTACTAGCTATTGATAAATCTTTGATACTCTCACTAAAGAAATTTATCTTGACCATTTTTTTAAGAATATAGTTCAATTAAGTTGTCTCCTAATGTTTCTCTAAGTTATATGATAATTAGGTTTTTGAATCCCACACATCAATAGTAATAAATAGAATCAAGTAGCCTTAGGATGCAGTAATAGTACCTCTGGCCAGGCGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGGATGGGGTGGGGGAATCACCTGAGGTCAGGAGTTCGACACCAGCCTAGCCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGACGTGGTGCTGCATGCCTGTAATCCCATCTACTCAGGAGGCTGAGGCAGAATTGCTTGATCCCAGGAGGCAGAGGTTGCAGTGAGGCGGGATCTCACCACTGTACTCCAGCCTGGGCTACAAGAGCAAGACTCCGTCCCTACCCTCCTCTGCCCGCCCCACCAAAAAAAAAGTACTTCTAACAAAACCATTCATCTGTTTTCAATCTCCTCATCTACACTTTATGCCTGTTAACATACAGAATCCCCAGCAGTAATTGGAATAATAAACTTTGTGTGCCTTTCTCCCTTGAATGTACTCACATAGAGTGAGTGTACTTTGTGATATATGTGCTTTCAATATGAACAGTTCCAGGAAAATTTAATGCTCAGCATCAGAAGTCTCTGTAATGCTTGTCTTTTACTTGTACTTCCCTGTAGTCTGCTGTGTTGGTGCTCTTAAATTTGCCAAATGATGATTTTGGTTAAGACATGGGGGGTGGGGTTACAAAATCCCAGTGGGAAATTAACATTTCCTAAGAAGGAAAATAAACAAGTTATCAACATGCCATCCTACAAAATGTCTTAAAACTGAAGATGTCACAGGGAAGTTGGAAATAGAGTTGTCTTTTTTTTTTTCCTTTTCAG
Seq C2 exon
ATTGAGAAAACAGATAGACGACAGAGCTTCGCATCCTTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150:ENST00000280772:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains